Lmac006050.1
Basic Information
- Insect
- Leucophenga maculata
- Gene Symbol
- -
- Assembly
- GCA_035044805.1
- Location
- JAWNNP010001005.1:1040726-1042407[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.6e-13 1.5e-09 37.7 0.0 3 44 368 409 367 410 0.91 2 3 0.01 23 5.1 0.0 27 37 439 449 435 455 0.88 3 3 6.6e-19 1.5e-15 56.9 0.0 4 41 478 515 476 517 0.95
Sequence Information
- Coding Sequence
- ATGGGCCACTCAGGCACAATACTGGATATAAATCGCGCGCTACGCAATGATGAAGTCAGCTGTGAGGTGACGCTTGTGGCAAAGGATGGCTGCACAGTGCGAGCACATCGATTTGTGCTCAGCACTTGCAGCGATTTGATGCGCAACGTGTTGGTGGATGTGCCACAGGGTCAGGAATGCACGGTTATGCTGCCCGATATAAATGGTATCCTTTTGGAGAGCATGCTCTCGTTTATATACATTGGCGAGACAAATCTGCCATCATCTAGTCTCACCGAATTTCTGGAGGCTATCAATTTGTTGGGCATCAAATCGGCCATCAGTTTTGAGTGCACACCGAACAGCTTGAACAACAGTACCGATGCCACAGCACTGGGCGACATAGCCGCTTTAAATGTGAAATCGATCAGTGGTCTACAAATAACACAAGAGGAACTGTTGGAAACGGATGGTGCCGTAGAGAAAATTGTGTCCAGCAATGCCATTGCCGGCGAACAACAAATTGGTCCGCCGCATGAGATCGAGTTCCTCGACGTCTATAGCGGTGCCAGTGAACCAAAAATCACATACTCTATTGAGCATATGGGCGGCAGCGGTGGACGCGCAGAGTTCATATTGACCGAAAATACTAACACTTTTACAGTCACCGATGCACAAACGCGTGGAACTCATAAACTGGAAAATTTCTCTAACGCTGTGGTTGAGGATGTAAACGAGGAAATGGTGGATGATGAAAACGATGAGGATGAAGAGGAGCTTGCCGACGAAGATGTTGCCGCTGCCGAAGACGATGCCGATGAAGATGATGACAACGAGGAAGTCGATGATACACAAATGATGGAGGACGACTATAATAATTCGGAACACTTGATCGAAATAGCTGGCACAAAAGTCACGGACATAACTGATAACGCTGATGTTGGTGATACAGAAGTACCTAGAGACACTGCGCAACTTTTGGAAGTCGTCAAGTCAAAGATAAAAGCTAAAACCGCAAAAGAACGTCAAGAACAGGCACAAGAAAGATTGCTACGCGAACATTTTCCGATCTTGAAAGTAAAACCTAGCACATCAACTAAAATAAGAAATCCAATTGAATGCGAAAATCTTGATAATGCTGCAAATGCTGTGCTCTATGAAGGTTTCAGTTTGCAAAAGGCTGCCGACAAGTTTAATATCTCGAAAACAGTGCTGTGGCGGCGTGTGCGCAAGGAGCCGAATTACATGAGCACCGGCCGTGAGAAACCGAAATTGACGATGGCCTATGAGCGTCTAAAGACCGGCGATTCGTTGAAAAACATCAGTAAGGATCTTGATATACCAATGTCGACGCTACATCGGCACAAGGTACGTCTGTCACATGAGGGTCGTTTGCCAAAGTTTTTGGCTAGTCGTCGTCGCGATTCAACACCAAAAGATGAGCTACAGCAAAAATTGGCCAAAGCGGTGCATGCCTGCGTCAATGAAGGCATGTCTCAGAATCATGcggcaaatatttttgaaatacccAAAAGTACTTTGTGGCGTCATCTGCGACGCCGTGTTAATGAGGCAGAAGAATCGATTGGCAATCAAGATGAGATAAAGAAGGAGTTTAGTCGTCTGAAgtag
- Protein Sequence
- MGHSGTILDINRALRNDEVSCEVTLVAKDGCTVRAHRFVLSTCSDLMRNVLVDVPQGQECTVMLPDINGILLESMLSFIYIGETNLPSSSLTEFLEAINLLGIKSAISFECTPNSLNNSTDATALGDIAALNVKSISGLQITQEELLETDGAVEKIVSSNAIAGEQQIGPPHEIEFLDVYSGASEPKITYSIEHMGGSGGRAEFILTENTNTFTVTDAQTRGTHKLENFSNAVVEDVNEEMVDDENDEDEEELADEDVAAAEDDADEDDDNEEVDDTQMMEDDYNNSEHLIEIAGTKVTDITDNADVGDTEVPRDTAQLLEVVKSKIKAKTAKERQEQAQERLLREHFPILKVKPSTSTKIRNPIECENLDNAANAVLYEGFSLQKAADKFNISKTVLWRRVRKEPNYMSTGREKPKLTMAYERLKTGDSLKNISKDLDIPMSTLHRHKVRLSHEGRLPKFLASRRRDSTPKDELQQKLAKAVHACVNEGMSQNHAANIFEIPKSTLWRHLRRRVNEAEESIGNQDEIKKEFSRLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00890249; iTF_00891098; iTF_00890892;
- 90% Identity
- iTF_00890249;
- 80% Identity
- iTF_00890249;