Lmac002187.1
Basic Information
- Insect
- Leucophenga maculata
- Gene Symbol
- MBD2
- Assembly
- GCA_035044805.1
- Location
- JAWNNP010000465.1:1097329-1098722[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.7e-22 2.1e-18 66.0 0.0 1 74 8 76 8 79 0.89 2 2 7.6e-06 0.028 14.3 0.0 29 76 140 196 112 197 0.88
Sequence Information
- Coding Sequence
- atgcaATTGAATTCAAGCATCATGGAACGTAAGCGTGTTGACTGCAGTGCGCTGCCGAAGGGCTGGCAGCGAGAAGAGGTGCGAAAGTCTGGTTGCGGCAATCTTGGAAAATCTGATGTCTTTTACTACAGTCCCACAGGCAAAAAATTTGATAGCAAGCCGCAACTGGCACGCCACCTTGGCGATGTTTTTGATATAAGCAGCTTCGATTTTCAAAGTGGTCGGATGATACAACATTATCTGCCACCAATATCGCTGTATCCAGCAAGCGGCTCCAGTAGCGGAGCAAATGCACTTAAACGAAAGTATAAAGCGCAACAGTTACAATTggacaaaaataataaagcaactacgagcagcagcaccaacaacaactctGTAGGCAATCCTCGCCAGCAACTCGAACTCAGTCGCACACACCGCACCGATGTCTCACTGGTGCCACCAATACGACAAACTGCTTCAATATTCAAACAACCCGTGACAGTAGTGCGCAACCATGAAAACAACAAAGTCAAGCATGACACTAAAAATGGCGCACAGGAGAAACCAAAGCAACTATTCTGGGAAAAGCGTTTGGAACGTTTGCGAGCATGCCATGATACCGGCGATGAATTTGATGAAATATCGCTGCCGAAGACAATACGTCTTGTAGGACCAAATGTTAACGAACAGACTGTGCTTCAATCGCTCGCTACGGCGCTACATGTACTCAACACTGGTGTTCACGGACAGACTTCGACTAAGGCTGAACTCACAAAAAATGCAATGGCATTTATGAATCCAGAACAACCGTTAATGCAAGCTGTAGTTATCTCGGAGGACGATATACGCAAACAAGAAGATCGTGTGAATTTAGCAAGACGAAAATTGCAAGATGCACTCAAGGTTTAA
- Protein Sequence
- MQLNSSIMERKRVDCSALPKGWQREEVRKSGCGNLGKSDVFYYSPTGKKFDSKPQLARHLGDVFDISSFDFQSGRMIQHYLPPISLYPASGSSSGANALKRKYKAQQLQLDKNNKATTSSSTNNNSVGNPRQQLELSRTHRTDVSLVPPIRQTASIFKQPVTVVRNHENNKVKHDTKNGAQEKPKQLFWEKRLERLRACHDTGDEFDEISLPKTIRLVGPNVNEQTVLQSLATALHVLNTGVHGQTSTKAELTKNAMAFMNPEQPLMQAVVISEDDIRKQEDRVNLARRKLQDALKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00890976;
- 90% Identity
- iTF_00890976;
- 80% Identity
- -