Basic Information

Gene Symbol
TRERF1
Assembly
GCA_035044805.1
Location
JAWNNP010002997.1:488760-503803[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.3e-09 1.4e-06 28.6 0.1 2 45 1886 1929 1885 1930 0.94

Sequence Information

Coding Sequence
ATGGCAACCCTGAATACGGTACAGAAGAGTATTCATCTGCCTTTGACAGGATTAAGTGTGCCACGCGTACAGCTTTTATGCAGCGCATCTGTGGCCAACGAAATTTCACCGCCCGCCAGTCAATCTCCGTCTTCAATATCATCGTCGTCTTCGGTGACGCTGCATTTCAGAGATGATTGCTCAAATCATTCAGCAGGTGCAACATCGGCCGTTAACTCGTCATCGATACAGTTGCCCACGTCAACACTAGAGCATGCGCTGACCATTGGCTATCCGGATCCGGAGATGTTGGCAGACGTTTTGGGCTCCATACAAACAGCTTcactcaagaacaacaacaacaacaacaacattacaACAAACAATACAAGtacagcaacgacaacagctgcaacagcaatagcaactacaaatgcatcaaataaaataacaatcaCGCGACGGaatacaacgacaacaacaacgacagctaCTAACggcagcaaccacaacaacagttATGCACCAACAGGCAACAATCgtgaaaatgtaaataattcaaaaatctCCGTGCACACCGTATCCACATCGACGAGCACTAATAGCGTCGGAATCAAACCCAATACCAGCTACATTAAAAACTGTCTGATACGGAGCAGTAGCTGCAGCAACACAGCGACCAATGTCACGACGTTGGCGCAAATaatgagcaacagcagcaacagcgcagCCGCACTCCTTCAAGCCAACGCGAACAGCAatagcaactgcagcagcaatagcaactTCAGCAATTCGTCCAGtggcagcagcgacagcaatCTCAGTCTCAGCAGCAACGGCAATCATAGCATACATAGTATACAGAGTCAGAGTCACAGTCACAGccagaacagcagcagcaacagcggcagtgGCACCGGCGGAGGCGTTAATTTCAAGTGCAGCAATGGCAAAATTGCAGCCACTACAATTGCGGTCTCTGTCAATGGTTCCACAGTAACAGCCATAGGCGGCACAGTTGGTACACTTGTTGTCACAGCGAATGGATGCACggcgacaacgacaacaacaacgacagcagcaacagcagtagcaacagctgCACTAAttagcacagcagcagcaacaacagtgtctgcaacatcatcatcaggaGCAAAGAAACACCGACCGAAGATATCGTCGCCAACGCGACACGGACCACAGCAGTGTCCGACTTGCAGCAAAGTCTTTGGAAATGCCTCAGCGCTGGCCAAACACAAATTGACGCACAGCGACGAACGGAAATACATTTGTGCGCTTTGCTCGAAAGCCTTCAAGCGACAAGATCACTTAAACGGACACATGATGACACACCGCAACAAGAAGCCTTACGAATGCAAGGCGGAGGGCTGTGGCAAATCGTATTGCGATGCACGCTCACTGCGTCGCCACACGGAGAACCACCATGCCGGCATAGTCATACCACACAGTCAAACACTATCGCCTACCACAGCCGCCTCGGCAAGTTCCATTGTCGGCAGCCTGAGTCTATCGCCAGCCACCGCTAGCGGTGATGCTAGTTCGCCGGATGGCGCTACAACATGTATTAGAACGTACATTTCAACAGGTGGTTCCATTGTGGACGCTGCCACTGGTATCGCGCTCACCGAGGAACAGATTAAGGCAATGAATCTACCCATCAAAACAGGTATGGCGCTGCTTTCGCCGACCACATCGACCTCGTCGActtcgtcgtcatcatcatcatctacgAGCAACTCCGTCGCCATATCCGCAAGCTCGCCGACAATCACAATCGCCGACGGGGCAACCATTGAGGGTGAGGGCCTGACGCGCGAACAACTCGATCTGATTAGCAAAATCATGCAGCAGACGAAGCAAACCAGTGCACAGGTTACTGTCTCCTCGCCCACAAGCGTCAATTCATATAAAATCAACACCGAGTCGACGTCTCCAACATCGGCCACAATGCAGAACAGACCGCGCACCTGGAATATGCAATTGGTTAACAGCGCACAAAATGTCTCAATCACTGTCGATGATGGCACTGGAGAAGTGATTGCATCAACGGTCTCCCCGGTAGATGGCGACAAGGATGAGGAACTCAATCAGCAGCTTGTCGCCACCGTTAATCCACAATTGCTGAATATTGTAAAAATCGATCAGAAACCGGTGGAGTGCAATCTCTGCCACCGAAAGTTCAAAAATATACCCGCCCTAAATGGGCATATGAGACTGCACGGTGGCTACTTCAAGAAGGATCCCGAGACAAAAAAGAATGAGAAGAAGGAGTCTAATGGGCCGCCGTTGCAGACAGCCAGCATTGGCGTACGCGCACTAATCGAGGAGAAGATTATCAGCAAGCGTAGCAAAGATTTAAACAAGGGTGCCTTCGTAGTTCCTGCACCACCCGGTAGTGTAGCAACTTCCACCACAACAACCATTCGACGATCGATTAGCGATTTGGAGAGCTTCATTAATCCCAAAACGAATAGCGTGAATATATCCCCGCATGTAGCGACGACAACCACCGCACTGCTACCCGCTGCTACCACAATCAAGAGTGCAAGCGGACTGAGCATTCAGCAGATCGGTCTGCCGCAAAGCATCGAGATCTTCAGCAGCGGTGGCGGTaaacagcagcaccagcagctgCCACAAAAGACTGTCAATGTCGGCTCCGGGCCGAACACGCTGACAATAACCACAAACAACATAACAGCTGCGACACAGCCGGGCATCATGAGCTCTCTTATCAGCCACAATAGTCTTGCATCGGCAACAAACTCCAAGAGTACATCGACCGATCCGAAAGACTCCACATTGATCGAGTTATTGAAACGCGGCACCCGCATCGCAGTCACCGCCAAGAAACCACAGTTGTTGCCGACTGCACCGACGAGTACAAaccagcagctgcagcaaagTAATGTGGGTGGCATCTGCAGCGAGTTGCATACGTCGGCACTACCGCCAATTATGACGACGTCAGGTGGGCGTCAGATCATCACCCAGAACAACCGCACTGTGATCATACCGTCCGATGTGCATGTAGTGTCCACCAAAAGTAAGACTGTCGTCGGTAACGGCATCGCTCCACGAAGCACATCGACACCGGCCAGCATATCGCTGTCAGATGGCACTCCACTGTCGCTGACCATAGCGCCGAGCAGCGACAGCAACGGAGCGGACACCGTATACACTGTCACCTACACCAGCGACACAGCAGGGCTCTTTGAAGATGCCGAGGTCTATAATGTCTCGGATACCGAGATGCTGCTTCAGACTGTAGACACCATGGAGCTGCTCAACGAAGACGGACAAATTAAAAGTCAACATTCCGAACAGTACACGCTCGTCAGCGAACAGACTGCTATCGATGACGTTACAACAGGTCTCACGTCCAGTCTTATGAAGGGTGAAACCGATtccaattgcaacaacaattccGCCAACATCAACCACAGCAACACAACCATGACAAATGCGACAACCGCTTTGCCCACTTTCCAACAGTTCCATTCCAAAGAGATTATAATGCAGAATAGCTCACAGATCCAAGCAATCACATCGATGCGTACCAACACACTCACACTGCCCGCCGATTTGAAACACCAGCTGGGCGTGTTGGCTTCGCCGTTGCACTCGCCACTGGCGTATCCCACGCCACCGTCAAGCCACGAAAATGCAGCGCAGTCTTCGCCGTTTATTGAGGATGGACAGCAGTTCACCGATGTGACAAGCGCATTCTTCGGCGGCGGCGACAAATGTGGCACAACGGACTTCACTAATGTGTACTTCAAGACCAGCGAGGAGGAGGAAGAGGAGGCGCTTACAGACAACGAGAAAATATTGAAACTGAAGAGCGTGCTAGAGGAAAGCGCATTCGATTCCTCCATGAAGGTGGAggatttgctaaacactaacgaaGATGACACCGAGTGTGATTTGCGGGAGTTTGCTGAGACGAATCTTTCCTTTTTGGATGAAGATCAGGAGTTTCTTAATGATTCGGGCAATGCGACTTCTCCGCTGTCGGAGTCGTTTTTTACGAGCGGCATAGGCACAGCAGAAGAGGTAAAAGAGGTGCTGCGCGAAGTATTACCGGAGGAGAACATGCAGCTGACCTCTGAGCAACAGGGCGAAAACATAATCGACCTATACTATCTACCCGGCTTAGGTCTACAGTCACAAATGATGCCAAACTCTGAAGATCCGCTACTATCCTCATCGCCACGTGAATTTGGACAGCAACGGCAAATGCCGCagatgcagcaacaacaaacagtgcATACCGATGTTCCGGCCGGCGTTGCAAGTGCAATCTACTCGCAACAAATCattcatcagcaacaacaacagcaacaaccacaatcGGATTTTATTGTGACTTCGTTGGCAACGTCGAATGCACAGAATTTGATGCAGCTGAATGCAGTACAAAGTCTGATGCCAGTACAAAACCAGATGCAGCAGTACATGGATGTCACCAATCAGCTCAGTGAAGCCAGTAACAACGCAGATATTATGCCATTgcaacagccacaacagcaacaacaacaagagcagcagcagcaacaacagaccATTACTACGATCGATGCCGCCATGCTGCAACCGATTATATATGCCACCTCCGCCACTGCCCAAGTCGGCAATACAACCACCGAAATTAAACAGGATTTAAATATGGCAATACAAGCAACAACTGGCATCGTTAATTTTTTACCCACTGAGTACAATGGAACCACCAACAACGCTGTTAGCGCCAGTACCACCAATCagcatttgcaacaacaacaacaactgcagcagcagcaagaacaacatcaacaaaaacagcaacaacaacagctagaacaacagcaacagctagaacaacagcaacaacaacaacagatacaacagcagcaacaacaacagctacaacatcaacaacaacagctacaacatcagcagcatcCACAACAGTTGTCAATGTTCGGCGCCATTCTAACAAAGTCGGTCTTGCAGCAGCCACTGCAGACAACGACACTGTCGACAGCTGTATCTGTCGCCACGTCCACCGTTATCTCCACCTTACAGCCGCTTTCCAATCAAACCAATTCAATATTAAAGCGTCGTTTGCGGCCCAACGGAGGTTCGAGTGACTCCAGTTTGCAGAACCTCTCCAAGTTCCAAACGCTTTCGCCGTATCGCTCTAAGTTGCGAAAACCCTCACGTACCCACTACACACCGGCGCCCATACTTAATCCCGATCGCAAGGGCTTCGGTTTATACAGTAATGTGCGCAAAGAGCTCGGTCAGGGGCTATTAAACTCTTTTGACGCATTCGATGATGATTTCGATGATCACATCGGCTTGGTCGACTTCTCCGATGAATCAAAGGTTAATTTGGGCTCAGCCTATCAAGCACAGCTCCCGACCTGCAAATCACTGGAAGATGACACCGACACACTGCAGGAGAGTGCCTCCGACGAGCTGATGTGGAATCCATGCGTACAGACGGAGGACAAGATACTCATGCGCTACATTGATCTAAGCAAATCCTCCGCAGTGCCGCTAGGCAGTCACTCGGAGGAGGTTGCACTCCAGACACTGCTCAAGGCCGAAGGTAATTCAGCTGCAGCAGTGCTAACCCTGTTGCAGACAGAGTCGAGCTCATTCCAAATGAAATGGTCCGCCTATGAGCTGGAAATTTTTCTCAAGGGCCTGGAAAAACATGGCAAAAACTTTATTAGTATTGCAGAAGAATTGCAGACAAAATCCACTGGTGAGTGCGTACAGATGTATTACTTCTGGAAGAAACTGTGTGTGGACTACAAAGTCTCCCACCTGAAGGCGGAACCTGTGCACCAGACGCCACCGGCAAGCGAGTTGAAACCGTATGTCTGCGAGGTGCCCGATTGCTCGGCAAGTTTTAGCTCGAAAGCAGCGTTGCATggacacacacgcatacatacatatggcAGAAatgtcaacaacagcaacaacaacagcagcagcagcaatcagcATGCAACAAATTCcgccaacagcagcaacaacaacaccaattcCAATACAACAGCAAATTACGCATgtgcacaaaatatttgtaattcaattagcaacaacaacaatccaagccacagcaacagcaacagcaacaacaacaataataataataacaatggcATGATCCTAAACTGCAGCGGCGGTGGTAGTAACGCCAGCATGatcaacggcagcagcagcggcatatTCGTCGGCCATGGTCAGAaagatgcaacaacaaacaggGATGGCGAATTTCCGTGCAAGGTGTGCGGCAAAGTTTTCAATAAAGTAAAGAGCCGCAGTGCGCACATGAAGACGCATCGCGTGCAGGAACCTGAAccacaaatacaacaacaacaacaacaacaacagcagcagcagcaacaccaacagcagcagatgCAAGCTCATGCAATCCCAGCCCAGGCGCTGCCAATGGCATCTACTCCTACATAG
Protein Sequence
MATLNTVQKSIHLPLTGLSVPRVQLLCSASVANEISPPASQSPSSISSSSSVTLHFRDDCSNHSAGATSAVNSSSIQLPTSTLEHALTIGYPDPEMLADVLGSIQTASLKNNNNNNNITTNNTSTATTTAATAIATTNASNKITITRRNTTTTTTTATNGSNHNNSYAPTGNNRENVNNSKISVHTVSTSTSTNSVGIKPNTSYIKNCLIRSSSCSNTATNVTTLAQIMSNSSNSAAALLQANANSNSNCSSNSNFSNSSSGSSDSNLSLSSNGNHSIHSIQSQSHSHSQNSSSNSGSGTGGGVNFKCSNGKIAATTIAVSVNGSTVTAIGGTVGTLVVTANGCTATTTTTTTAATAVATAALISTAAATTVSATSSSGAKKHRPKISSPTRHGPQQCPTCSKVFGNASALAKHKLTHSDERKYICALCSKAFKRQDHLNGHMMTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHAGIVIPHSQTLSPTTAASASSIVGSLSLSPATASGDASSPDGATTCIRTYISTGGSIVDAATGIALTEEQIKAMNLPIKTGMALLSPTTSTSSTSSSSSSSTSNSVAISASSPTITIADGATIEGEGLTREQLDLISKIMQQTKQTSAQVTVSSPTSVNSYKINTESTSPTSATMQNRPRTWNMQLVNSAQNVSITVDDGTGEVIASTVSPVDGDKDEELNQQLVATVNPQLLNIVKIDQKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDPETKKNEKKESNGPPLQTASIGVRALIEEKIISKRSKDLNKGAFVVPAPPGSVATSTTTTIRRSISDLESFINPKTNSVNISPHVATTTTALLPAATTIKSASGLSIQQIGLPQSIEIFSSGGGKQQHQQLPQKTVNVGSGPNTLTITTNNITAATQPGIMSSLISHNSLASATNSKSTSTDPKDSTLIELLKRGTRIAVTAKKPQLLPTAPTSTNQQLQQSNVGGICSELHTSALPPIMTTSGGRQIITQNNRTVIIPSDVHVVSTKSKTVVGNGIAPRSTSTPASISLSDGTPLSLTIAPSSDSNGADTVYTVTYTSDTAGLFEDAEVYNVSDTEMLLQTVDTMELLNEDGQIKSQHSEQYTLVSEQTAIDDVTTGLTSSLMKGETDSNCNNNSANINHSNTTMTNATTALPTFQQFHSKEIIMQNSSQIQAITSMRTNTLTLPADLKHQLGVLASPLHSPLAYPTPPSSHENAAQSSPFIEDGQQFTDVTSAFFGGGDKCGTTDFTNVYFKTSEEEEEEALTDNEKILKLKSVLEESAFDSSMKVEDLLNTNEDDTECDLREFAETNLSFLDEDQEFLNDSGNATSPLSESFFTSGIGTAEEVKEVLREVLPEENMQLTSEQQGENIIDLYYLPGLGLQSQMMPNSEDPLLSSSPREFGQQRQMPQMQQQQTVHTDVPAGVASAIYSQQIIHQQQQQQQPQSDFIVTSLATSNAQNLMQLNAVQSLMPVQNQMQQYMDVTNQLSEASNNADIMPLQQPQQQQQQEQQQQQQTITTIDAAMLQPIIYATSATAQVGNTTTEIKQDLNMAIQATTGIVNFLPTEYNGTTNNAVSASTTNQHLQQQQQLQQQQEQHQQKQQQQQLEQQQQLEQQQQQQQIQQQQQQQLQHQQQQLQHQQHPQQLSMFGAILTKSVLQQPLQTTTLSTAVSVATSTVISTLQPLSNQTNSILKRRLRPNGGSSDSSLQNLSKFQTLSPYRSKLRKPSRTHYTPAPILNPDRKGFGLYSNVRKELGQGLLNSFDAFDDDFDDHIGLVDFSDESKVNLGSAYQAQLPTCKSLEDDTDTLQESASDELMWNPCVQTEDKILMRYIDLSKSSAVPLGSHSEEVALQTLLKAEGNSAAAVLTLLQTESSSFQMKWSAYELEIFLKGLEKHGKNFISIAEELQTKSTGECVQMYYFWKKLCVDYKVSHLKAEPVHQTPPASELKPYVCEVPDCSASFSSKAALHGHTRIHTYGRNVNNSNNNSSSSNQHATNSANSSNNNTNSNTTANYACAQNICNSISNNNNPSHSNSNSNNNNNNNNNGMILNCSGGGSNASMINGSSSGIFVGHGQKDATTNRDGEFPCKVCGKVFNKVKSRSAHMKTHRVQEPEPQIQQQQQQQQQQQQHQQQQMQAHAIPAQALPMASTPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00890914;
90% Identity
iTF_00890425;
80% Identity
iTF_00890425;