Basic Information

Insect: Leucoma salicis
Gene Symbol: -
Assembly: GCA_948253155.1
Location: OX411826.1:4156253-4164594[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.031 2.9 9.2 0.1 2 23 453 475 452 475 0.92

2 9 0.00091 0.085 14.1 1.0 2 23 498 519 497 519 0.94

3 9 0.00025 0.023 15.9 2.0 1 23 523 545 523 545 0.96

4 9 0.0047 0.44 11.8 1.8 1 23 550 573 550 573 0.96

5 9 9.4e-05 0.0088 17.2 1.3 2 23 581 603 581 603 0.95

6 9 0.0081 0.75 11.1 4.8 1 23 610 633 610 633 0.96

7 9 0.001 0.094 13.9 1.4 1 23 639 661 639 661 0.97

8 9 4.4e-05 0.0041 18.2 6.9 1 23 667 689 667 689 0.99

9 9 1.4e-06 0.00013 22.9 1.9 1 23 695 718 695 718 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.031	2.9	9.2	0.1	2	23	453	475	452	475	0.92
2	9	0.00091	0.085	14.1	1.0	2	23	498	519	497	519	0.94
3	9	0.00025	0.023	15.9	2.0	1	23	523	545	523	545	0.96
4	9	0.0047	0.44	11.8	1.8	1	23	550	573	550	573	0.96
5	9	9.4e-05	0.0088	17.2	1.3	2	23	581	603	581	603	0.95
6	9	0.0081	0.75	11.1	4.8	1	23	610	633	610	633	0.96
7	9	0.001	0.094	13.9	1.4	1	23	639	661	639	661	0.97
8	9	4.4e-05	0.0041	18.2	6.9	1	23	667	689	667	689	0.99
9	9	1.4e-06	0.00013	22.9	1.9	1	23	695	718	695	718	0.98

Sequence Information

Coding Sequence: ATGGCTTCGAGCAGTAACGAAATAAGTACTTATTTTGAGAGGTGTAGATGTTGTCTTAACTATGGCTACTTGAAAAATATGTGGCAAGATCACTTTAGGGAAGGAGAGAAGGAAATATACGTGGTGATGCTTGTACAATGTTTCGGTCTTTCTTGGGAGGCAAAAGATAATTCCCCCAAGAATGATTGGATCTGTGAGGTCTGTATCTCCCGTTTGCGTGAGGCTTGTGATTTCAAGAAGCTTGTTTTACAATCTCAAGTGAAATTGGAGCATATAGATGAAGGATCCGACATTGATAGGAAAATAGAAAAATTTGATTCATCATTAGAAGATCAACAGCTAGAAATTGAAGATGCAGCTGATGACGAATCCGTTGACCCCTGCTATGTAGACGTGGATAAACCTGAATGTGAAGACCCAGATGATCCTGATTATGAGGATATCGATGATCCTGATTATGTAAACCTAGTTAAACCTGATTATGTAGAACATTATGAAACAGAATATCTAGAGGAAGATGAGCCTAATGACATGGAATATGAGAATATTGAGTATCTAGAAGATGAAGATAGTGAGATTCAGACTTCACAGCAAACCCGAAGAATAGCACGTCGACCTAGAAAATCCGATACATCAACTGGAGGTAGAAAATGGCCAAAAAAATTGCCTAAATCCGAACGATACAAGACCTATAAACAATACACAGAGGAAGAATTAAGGGAGTGTTTGGCTGCAGTTAGACAGGACAAATTGTCAACTAAGGAGGCGGCAGAGAAATATAACATACCCCAAAAGACTATAGCAGCTAAATTGAGACAGGAACCCAAAGATGACCAGAATGGAACTACAAAGGAAAAAGGAATAAAGCTTACAAAATTTCGTGAGAACTTATTAAAAATAAATGATATTATGCATAAAGCTGCTGAAATTAAACAGAATAATGCAAATATGGTTAGTAAAAATAGATTCAAAGAAAAAGACGAAGCATCTGAAAATAAATTAAATATAAAGGTGAAAAAAGATATTATTGATACCAAAATAGATGATAAAATGTTGAAATCAAAGTATAAAACTAAAACAGCAGTAAATAAAAACACTAAAGGCACCGAACAATCTGACTGCGATGAAATGAACAAGCATAAAAACAATATAAGAATTATTCTGGAATGTTCCAACGCTACACTTATCAAAGGGACTTGGAAAAATGGATATTCATGTTGTTTTTGTAAAACAGAGAATAACAATCCTTTAGAAATTAAGGCCCATAATCTGAAAATGCACGCCGATGCAGGACATCAAGCTATCAAAGCGAAATACGTATCTGTATTAGTAATACGTTTGGATATCACAGGTTTAACGTGTAAACTCTGCGGTAGAAATATCGAGACCTTAGAAACATTAACTGAACACTTGGCACAAGAACATAACAAAAATATTTACAAAGACATTAAAAATCACATAATTCCTTTTAAGTTTAACACCGATATTCTGCAATGTGTTAAATGTAACAAAGAATTCAAGTATTTTAAACTTTTACGCGAGCACATGGGCGAACACTACCCTAATTATGAATGCAATCTATGCGATAGAACTTTCGTTAATAAGCAATCAATGCAAACACATAGTTATAGGCACAAAAGTGGCGTTTTCAAATGCTTGCATTGTCCTAAAGTTTTTGACACGCGACCTAAGCGAAGTGTCCATGAAAGGGTAACACATACTCTGTTTAACAAAACTAGGAAATGCACTTATTGTGACGAGAGATTTTCGACAAAAGACTTGGTGCGGAGACACGAGTCGAAAATCCACGGCGTAAAACTGCCCGTTTTCAATTGTACAGCATGCAATAAGAGTTACAACAGCCATAGTACTTTAGTAACACACAAAAAGCGTTTTCATCTGATGTTGAGGCCGCACAAGTGTGCTTATTGCGATATGGCATTTTTTTCTAAAGTAGAATTGAGTTCTCATACTGTAACTCATACAAAAACGAGAAATTTTAAATGTAATATTTGTAGTAAGTGTTTCGGGACTAGGTGCAGTCTGAAGCAACATTTAAGAGTGCATATTAACGATAAAAGATTCAAATGTGATAACTGTGACCGTGCGTTTACACAAAGGACCGCTTTTAGAGTTCATATGAGAAGCAAACATTCGATAATTATTTAA
Protein Sequence: MASSSNEISTYFERCRCCLNYGYLKNMWQDHFREGEKEIYVVMLVQCFGLSWEAKDNSPKNDWICEVCISRLREACDFKKLVLQSQVKLEHIDEGSDIDRKIEKFDSSLEDQQLEIEDAADDESVDPCYVDVDKPECEDPDDPDYEDIDDPDYVNLVKPDYVEHYETEYLEEDEPNDMEYENIEYLEDEDSEIQTSQQTRRIARRPRKSDTSTGGRKWPKKLPKSERYKTYKQYTEEELRECLAAVRQDKLSTKEAAEKYNIPQKTIAAKLRQEPKDDQNGTTKEKGIKLTKFRENLLKINDIMHKAAEIKQNNANMVSKNRFKEKDEASENKLNIKVKKDIIDTKIDDKMLKSKYKTKTAVNKNTKGTEQSDCDEMNKHKNNIRIILECSNATLIKGTWKNGYSCCFCKTENNNPLEIKAHNLKMHADAGHQAIKAKYVSVLVIRLDITGLTCKLCGRNIETLETLTEHLAQEHNKNIYKDIKNHIIPFKFNTDILQCVKCNKEFKYFKLLREHMGEHYPNYECNLCDRTFVNKQSMQTHSYRHKSGVFKCLHCPKVFDTRPKRSVHERVTHTLFNKTRKCTYCDERFSTKDLVRRHESKIHGVKLPVFNCTACNKSYNSHSTLVTHKKRFHLMLRPHKCAYCDMAFFSKVELSSHTVTHTKTRNFKCNICSKCFGTRCSLKQHLRVHINDKRFKCDNCDRAFTQRTAFRVHMRSKHSIII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00889143;
90% Identity: iTF_00889143;
80% Identity: iTF_00889143;