Lsal015862.1
Basic Information
- Insect
- Leucoma salicis
- Gene Symbol
- -
- Assembly
- GCA_948253155.1
- Location
- OX411826.1:4156253-4164594[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-08 1.3e-05 25.5 0.0 1 34 235 268 235 276 0.91 2 2 3.6 1.6e+03 -0.4 0.1 29 39 621 631 621 635 0.88
Sequence Information
- Coding Sequence
- ATGGCTTCGAGCAGTAACGAAATAAGTACTTATTTTGAGAGGTGTAGATGTTGTCTTAACTATGGCTACTTGAAAAATATGTGGCAAGATCACTTTAGGGAAGGAGAGAAGGAAATATACGTGGTGATGCTTGTACAATGTTTCGGTCTTTCTTGGGAGGCAAAAGATAATTCCCCCAAGAATGATTGGATCTGTGAGGTCTGTATCTCCCGTTTGCGTGAGGCTTGTGATTTCAAGAAGCTTGTTTTACAATCTCAAGTGAAATTGGAGCATATAGATGAAGGATCCGACATTGATAGGAAAATAGAAAAATTTGATTCATCATTAGAAGATCAACAGCTAGAAATTGAAGATGCAGCTGATGACGAATCCGTTGACCCCTGCTATGTAGACGTGGATAAACCTGAATGTGAAGACCCAGATGATCCTGATTATGAGGATATCGATGATCCTGATTATGTAAACCTAGTTAAACCTGATTATGTAGAACATTATGAAACAGAATATCTAGAGGAAGATGAGCCTAATGACATGGAATATGAGAATATTGAGTATCTAGAAGATGAAGATAGTGAGATTCAGACTTCACAGCAAACCCGAAGAATAGCACGTCGACCTAGAAAATCCGATACATCAACTGGAGGTAGAAAATGGCCAAAAAAATTGCCTAAATCCGAACGATACAAGACCTATAAACAATACACAGAGGAAGAATTAAGGGAGTGTTTGGCTGCAGTTAGACAGGACAAATTGTCAACTAAGGAGGCGGCAGAGAAATATAACATACCCCAAAAGACTATAGCAGCTAAATTGAGACAGGAACCCAAAGATGACCAGAATGGAACTACAAAGGAAAAAGGAATAAAGCTTACAAAATTTCGTGAGAACTTATTAAAAATAAATGATATTATGCATAAAGCTGCTGAAATTAAACAGAATAATGCAAATATGGTTAGTAAAAATAGATTCAAAGAAAAAGACGAAGCATCTGAAAATAAATTAAATATAAAGGTGAAAAAAGATATTATTGATACCAAAATAGATGATAAAATGTTGAAATCAAAGTATAAAACTAAAACAGCAGTAAATAAAAACACTAAAGGCACCGAACAATCTGACTGCGATGAAATGAACAAGCATAAAAACAATATAAGAATTATTCTGGAATGTTCCAACGCTACACTTATCAAAGGGACTTGGAAAAATGGATATTCATGTTGTTTTTGTAAAACAGAGAATAACAATCCTTTAGAAATTAAGGCCCATAATCTGAAAATGCACGCCGATGCAGGACATCAAGCTATCAAAGCGAAATACGTATCTGTATTAGTAATACGTTTGGATATCACAGGTTTAACGTGTAAACTCTGCGGTAGAAATATCGAGACCTTAGAAACATTAACTGAACACTTGGCACAAGAACATAACAAAAATATTTACAAAGACATTAAAAATCACATAATTCCTTTTAAGTTTAACACCGATATTCTGCAATGTGTTAAATGTAACAAAGAATTCAAGTATTTTAAACTTTTACGCGAGCACATGGGCGAACACTACCCTAATTATGAATGCAATCTATGCGATAGAACTTTCGTTAATAAGCAATCAATGCAAACACATAGTTATAGGCACAAAAGTGGCGTTTTCAAATGCTTGCATTGTCCTAAAGTTTTTGACACGCGACCTAAGCGAAGTGTCCATGAAAGGGTAACACATACTCTGTTTAACAAAACTAGGAAATGCACTTATTGTGACGAGAGATTTTCGACAAAAGACTTGGTGCGGAGACACGAGTCGAAAATCCACGGCGTAAAACTGCCCGTTTTCAATTGTACAGCATGCAATAAGAGTTACAACAGCCATAGTACTTTAGTAACACACAAAAAGCGTTTTCATCTGATGTTGAGGCCGCACAAGTGTGCTTATTGCGATATGGCATTTTTTTCTAAAGTAGAATTGAGTTCTCATACTGTAACTCATACAAAAACGAGAAATTTTAAATGTAATATTTGTAGTAAGTGTTTCGGGACTAGGTGCAGTCTGAAGCAACATTTAAGAGTGCATATTAACGATAAAAGATTCAAATGTGATAACTGTGACCGTGCGTTTACACAAAGGACCGCTTTTAGAGTTCATATGAGAAGCAAACATTCGATAATTATTTAA
- Protein Sequence
- MASSSNEISTYFERCRCCLNYGYLKNMWQDHFREGEKEIYVVMLVQCFGLSWEAKDNSPKNDWICEVCISRLREACDFKKLVLQSQVKLEHIDEGSDIDRKIEKFDSSLEDQQLEIEDAADDESVDPCYVDVDKPECEDPDDPDYEDIDDPDYVNLVKPDYVEHYETEYLEEDEPNDMEYENIEYLEDEDSEIQTSQQTRRIARRPRKSDTSTGGRKWPKKLPKSERYKTYKQYTEEELRECLAAVRQDKLSTKEAAEKYNIPQKTIAAKLRQEPKDDQNGTTKEKGIKLTKFRENLLKINDIMHKAAEIKQNNANMVSKNRFKEKDEASENKLNIKVKKDIIDTKIDDKMLKSKYKTKTAVNKNTKGTEQSDCDEMNKHKNNIRIILECSNATLIKGTWKNGYSCCFCKTENNNPLEIKAHNLKMHADAGHQAIKAKYVSVLVIRLDITGLTCKLCGRNIETLETLTEHLAQEHNKNIYKDIKNHIIPFKFNTDILQCVKCNKEFKYFKLLREHMGEHYPNYECNLCDRTFVNKQSMQTHSYRHKSGVFKCLHCPKVFDTRPKRSVHERVTHTLFNKTRKCTYCDERFSTKDLVRRHESKIHGVKLPVFNCTACNKSYNSHSTLVTHKKRFHLMLRPHKCAYCDMAFFSKVELSSHTVTHTKTRNFKCNICSKCFGTRCSLKQHLRVHINDKRFKCDNCDRAFTQRTAFRVHMRSKHSIII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00889583;
- 90% Identity
- iTF_00889583;
- 80% Identity
- iTF_00889583;