Lsal016404.1
Basic Information
- Insect
- Leucoma salicis
- Gene Symbol
- -
- Assembly
- GCA_948253155.1
- Location
- OX411826.1:13795781-13798138[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 4.9e-06 0.00046 21.2 4.0 1 23 8 31 8 31 0.95 2 21 0.00076 0.071 14.3 0.5 2 23 37 59 36 59 0.95 3 21 2.1e-05 0.002 19.2 0.6 2 23 68 90 68 90 0.97 4 21 4e-05 0.0037 18.4 1.9 2 23 99 121 98 121 0.94 5 21 0.00016 0.015 16.4 4.4 2 23 129 151 129 151 0.97 6 21 9.7e-06 0.00091 20.3 2.9 2 23 160 182 160 182 0.97 7 21 5.2e-07 4.8e-05 24.3 1.3 1 23 188 211 188 211 0.97 8 21 0.00011 0.011 16.9 0.9 1 23 219 242 219 242 0.95 9 21 0.00098 0.092 14.0 0.3 3 23 261 282 259 282 0.96 10 21 0.00064 0.06 14.6 1.4 3 23 310 331 308 331 0.97 11 21 0.1 9.5 7.6 0.9 2 21 339 358 338 359 0.93 12 21 0.02 1.9 9.8 1.7 2 23 368 390 367 390 0.96 13 21 0.00099 0.093 14.0 4.0 1 23 412 435 412 435 0.97 14 21 6.4e-05 0.006 17.7 2.0 2 23 442 464 441 464 0.96 15 21 7.2e-05 0.0068 17.5 1.8 2 23 471 493 470 493 0.93 16 21 0.0069 0.65 11.3 2.2 1 23 499 522 499 522 0.97 17 21 0.18 16 6.9 7.1 2 23 530 552 530 552 0.95 18 21 3.5e-05 0.0032 18.5 0.6 1 23 559 582 559 582 0.97 19 21 0.025 2.3 9.6 2.8 1 22 589 610 589 612 0.89 20 21 0.0062 0.58 11.5 2.7 2 23 626 648 626 648 0.95 21 21 0.5 47 5.4 1.0 1 13 698 710 698 712 0.89
Sequence Information
- Coding Sequence
- ATGTATCAAAATCTACTGGACTTCATCTGTGACTATTGCTCAAGAACTTTCACAAGAAAATATAATTTACAAAATCATATAGAAAATTGTCATACAAAATGTTCCAGTCGGTGTGATATGTGCGGACAAAGTTATGGCAGCCCCACTGGCTTACTGCATCACATGTTCAGGGGACACAACAGCAATGGAAAACCATTCCCTGAATGCGATCTTTGTGGACGAACCTTCACAAGAAAACCACATATAATATCTCACATGATCACTGTTCATTTGCAAGGTTTAGGTGAAGAAATTAGGTGTAGATTGTGCGATAGAACTTTTACTACAGGTAGAAATTTAAAAAGACATATGAGTCAACAACACAATCCTAATGTTGAATATCCAACGTGCCATTATTGCGATAGAATTTTTAAAGGAAAACATTCTCTTATAGCACACATACACACAGTGCACAGTCTGAATGAGAGACAAGGAGCGAAATGCCATTTATGTGAGAAGGTGTACAGTAACAACCGCAATTTGAAACGACATATTGAAATGTTTCATGGGGATAAATCTGAATTTAAGTGTGATATATGCCCTAAAGTGTACACATCAAATCAGAGTTTGCGTAGACATTTACGAAATACACACAGTACGGATAGCAATGAACAGTTTGAATGTAATTATTGTAATAAAGCCTTTATTGGCAGAAGCAATTATGACAGTCATATCCAATTTAATCATCCAACTTCAGATGTTGATGCTAAGAGTGATGGTAAAAGCGAAGGAGAAATAATCTGCGAGTTATGTCATCAAGTTTACGAAGAAGAGTCTATGCTTCGTCAGCATATAAAAACAGAACATTCTTTCAAAGCATTTTACAAGTATTGCAGAAATGCTTTAATAAAACAACACCAGACTGAGTTTGCTAATAATGTCTATGGGTGTGAGTTTTGCCAACATAACTTTTCAAGTGTATATGAATTAAAAGACCATATGAGAGTAAACCATGACACAGAGTACTCTCTCTCAACCTGCAATGTATGTTTCAATAAGTTTTATTCTAAAGAAAGTATGAAAGCTCACAAAAAAGTTTGTATACCACCACCAGATGTGAAATCGTGCAGTCATTGTGATAAACTGTTTACTGTTATATCTAGTTTAGAATTTCACATTCGAATATTTCACCCCCAAGCTCAAATTGCAGACTCAAACATAACTTCATCTAACATTGTTGAAGAAAACACATCATTCAAGTGTGGTTATTGCAACCGTGTGTACTACAGTGACCGTTCATTGAAACATCATATAAAATTAAAACATACAACTGATGAGCAAGTTGAATGTGAGCACTGTAATAAGATTTGTAGCAATAAGTACTATTTAGCTTCTCATATTAAAATTGTTCACAACAATGATTCATGGTCTCAATGTGAATACTGTGATAAACAATTCAAATCTAAAAGAAATATAAGGAGACATGTTGAATACACACATTTAGGTATGCAAAGATATAAATGTATTGAGTGTGAGACATTGTTCAAAGAGAAACGTAGTCTACGAAAGCATGTTAGAACAAAACATCCAAATTCTGCTTTATTCCCACAATGTCACATCTGTCATAAACGATTTGAATCTGCGAAATCTTGCAAAATACATTTGAAACTATTACATTCTTTTAACATGAATACGTATCCATGCCACCTCTGTTCTGTGTCATTTAGCTCCAACGAGGCATTAAAGATTCATCTTAATATAAAACATTTAGCTGAAGATGAGATATACAAATGTCAAGATTGTAACCTGGTTTTCAAGGGCCAGGACAAATTTGATAACCACAATGAATTATGTCATGTAAATGTAGTTTCAAGTGTAAAGCAGAAAGTATCACCACGGTGCGTTCTCTGTATAAAAGACTTTAGTACCAGGAAAACTTTGAAAAGACATATTAAGAAGTTTCATAGTGAATTTGAAGTGGAAGAGTTGGTGAATTTTGGTTCTAGGGAGAAAATTTTCACCGTTGATTGTGAGGAATGTGTTAAGAATTTTGGGGATGATTTCTATTATAACATATACCAGAAGGTGAAGCATTTGAAAAATTCTGTTATTTTTAAATGTGAGACATGTCACACTTCCTATAGCTCTCTAGAGTATTCGGTACAACGGTACAAATTAAAAAACAGTGATGTGTCTAAAACTAAAGCTATCTTAAGTGAACTGTGTACTACTGAGATGAGCGAGGAAGAGACTGGGTTTTCCAGTGTTGGATTACTTCAAGAGTTGCCAGAAACCACTACAGAAGGACTATTAATTAAAGATGAGCCGGTAGATTTGGAGTATTATGATAAAATGAAAACTGAGCTGGAGTCGCCTTAA
- Protein Sequence
- MYQNLLDFICDYCSRTFTRKYNLQNHIENCHTKCSSRCDMCGQSYGSPTGLLHHMFRGHNSNGKPFPECDLCGRTFTRKPHIISHMITVHLQGLGEEIRCRLCDRTFTTGRNLKRHMSQQHNPNVEYPTCHYCDRIFKGKHSLIAHIHTVHSLNERQGAKCHLCEKVYSNNRNLKRHIEMFHGDKSEFKCDICPKVYTSNQSLRRHLRNTHSTDSNEQFECNYCNKAFIGRSNYDSHIQFNHPTSDVDAKSDGKSEGEIICELCHQVYEEESMLRQHIKTEHSFKAFYKYCRNALIKQHQTEFANNVYGCEFCQHNFSSVYELKDHMRVNHDTEYSLSTCNVCFNKFYSKESMKAHKKVCIPPPDVKSCSHCDKLFTVISSLEFHIRIFHPQAQIADSNITSSNIVEENTSFKCGYCNRVYYSDRSLKHHIKLKHTTDEQVECEHCNKICSNKYYLASHIKIVHNNDSWSQCEYCDKQFKSKRNIRRHVEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSALFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCHLCSVSFSSNEALKIHLNIKHLAEDEIYKCQDCNLVFKGQDKFDNHNELCHVNVVSSVKQKVSPRCVLCIKDFSTRKTLKRHIKKFHSEFEVEELVNFGSREKIFTVDCEECVKNFGDDFYYNIYQKVKHLKNSVIFKCETCHTSYSSLEYSVQRYKLKNSDVSKTKAILSELCTTEMSEEETGFSSVGLLQELPETTTEGLLIKDEPVDLEYYDKMKTELESP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00889448;
- 90% Identity
- iTF_00889448;
- 80% Identity
- iTF_00889448;