Lsal004074.1
Basic Information
- Insect
- Leucoma salicis
- Gene Symbol
- -
- Assembly
- GCA_948253155.1
- Location
- OX411812.1:21575933-21576781[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-10 1.7e-07 31.6 0.0 2 38 9 46 8 51 0.93 2 2 7.9 3.6e+03 -1.5 0.1 2 10 156 164 155 165 0.87
Sequence Information
- Coding Sequence
- ATGCCGAAGGTACCGCAATACAGAAAAGAGGCCCTTGATAAGGCTTTAGAAAAAATTAATTCAAAAACAATGTCTTTAAGAGCAGTCGCAAGAAAATATAATATACCAAGAGGTACTTTACAGTTTAAACTAAAAAATCCTACTTCAAGATCTCAATTTGGGCCAACACCGTATTTAACATATGAAGAAGAAAATAGTATCGTGGAGTGGTTGATCAAATTATCCCGTAAAGGCTTTCCTAGAAAGTCGTATGATATTCTGGACACAGTTCAAACATTTTTGACTGATAATCCACGCGAATCTCCTTTTGTCAATAATCGACCTGGCCAGGGATGGCTTAAAGCTTTTTTCAAACGTCACCCCAGTTTAGCTACAAGAACTAGCGAGGAAGTAACTAAAGCCAGTGCCTGTGTGACTGAAGCAGACATAAAGAAGTGGTTTCTTGAAATAAGAGACTACTTGGAAAATGAAAACCTGTTAGAGGCAATTCAGGATCCAAAACGAGTTTTCAACGCTGACGAGACAGGATTTCAGCTTTGCCCGTCTACTGGTCGCGTGATTGCTGCCAAAGGAGACAAAAATGTTTACTCTGTGGAGCTAGGAAACTCAAAGGAAAACGTAACGGTGTTATTCACATTTTCTGCTGACGGCAAAACTTGTCCTCCATTAATTGTGTTTCCCTACAAACGACTGCCTGAAAAAATTGCGACATCTGTACCACCCAAATGGGGTATTGGCCGCAGTGATAAGGGATGGATGACGGCAGATGTTTTTAATCAATTTATCACTGAAATATTCGTTCCATACCTCACCGAAAATAACATAAAAAACCTGTTATCCTATTTATAG
- Protein Sequence
- MPKVPQYRKEALDKALEKINSKTMSLRAVARKYNIPRGTLQFKLKNPTSRSQFGPTPYLTYEEENSIVEWLIKLSRKGFPRKSYDILDTVQTFLTDNPRESPFVNNRPGQGWLKAFFKRHPSLATRTSEEVTKASACVTEADIKKWFLEIRDYLENENLLEAIQDPKRVFNADETGFQLCPSTGRVIAAKGDKNVYSVELGNSKENVTVLFTFSADGKTCPPLIVFPYKRLPEKIATSVPPKWGIGRSDKGWMTADVFNQFITEIFVPYLTENNIKNLLSYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00822883;
- 90% Identity
- -
- 80% Identity
- -