Lsal019278.1
Basic Information
- Insect
- Leucoma salicis
- Gene Symbol
- -
- Assembly
- GCA_948253155.1
- Location
- OX411808.1:3811246-3813636[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-12 9.9e-10 38.7 0.1 1 38 13 50 13 54 0.95 2 2 2.4 1.1e+03 0.1 0.0 2 12 551 561 550 564 0.87
Sequence Information
- Coding Sequence
- ATGGAGCCTTCTACTAAAAAACGGCGCGGAGAATGGACAGAAACACAGTTGAAATCCGCCCTTCAAGCAGTAAAAACCTGCCAAATGTCACAGCGAAAAGCTGCTGaaacatatggcataccaaggcgaacattaagaaatcacatagaatctggttctgtggagaagataactggtcgtgtccctattcttaataaatcacaagaaaaagatttatgcaaaaggataattagactgtctcagatagggatgccattaactcccaaaattgttcggaagcaggcttacgaattttgtaaagcgaataatgtaccgaatctttttagtgataaaaagaatattgctggaaaaaaatggctcacaaattttgtgaaacgcaatccagaaatatcgcttcgaagggctcaattgttaaatcccgccagagcacaaaaactcaacaagccaatagtttccaaacattttgaagccctaaaagacatttacgatgaaataaatatttccacccaccctgaacgcctttataacatggatgaaaagggatgtcgtctaacactgcaccaccaacagaaggtttttgcagcaaaagggaccaagagagtgcactttgttagtcaagaacatgcagaaaatgtcacaatcgctatgtgtgtaagtgcaacgggcaacactgtgccacctataattatatttaagggcaaaaggttgagaccagaattttgtgacaatttaccacctggtagtttagtcaaaatggctccaaagggcagtatgccgaccgaactttttgttgatttcatacaccacttagggcagaataaatctccaggaaaatgcctactaatttttgatggggcctcctcacatttagacgcaagaatcgttgacgctgctgatgcccatgatattgtactctattgcttgccttcaaatacgactcatgagcttcaaccgctagacaaatcggtaaataaatcgtttgaacatttttgggatgaggaggttttgttgtatgcatatcagcatccagaacgtaaactaactaaaactcgttttacgaaaatttttacaaaagtttggtctaagtgcatgaccaaagacaatataatcagtgggtttagagctaccggcctctttccgtacgatcccaacgcaattcctgaagaagcgtatgcaccttcAGTACTTACACTAATGCCCGATCCACAGGTGGGAAGTTCCTCAAGAATGCCTGATTCAGTTTCTAATTCATCCCCTTCAAGAGATTCTATTCCAAGAAGTCCTGCTATGTACCCAAGATGCGATAATCATTCGGATGAAAATTTTTCAAATCATGAAGAAGAGGACAGGAATTTATCACCGTCAATTTTAATTCACGATGATGTATCCCCAAATCATGGAAATTATGTCGAAATCATTGAATCTTATCCACAATCTCCAACTTTTGTCAAAAAAATTGTTGATTATAGCTCCTCTTTTGAAGATTTTAACATGGACAACTCAGAGAATCAAGATCCGATTCAAAAGCTACCTGTTTTGGAGAAATATAATAGAAGTACAGAGTTTTGTTCACCAGTTCCTACTATCTCTGGCTTAAATAAGCAGCCTTTAATACCACGTTTAGGTTCAAGAACGCCTGATTTATCTGAAAATGAGGATTTTGATGAAGCCCTTCAGAAAATAAAAAATTCTACGAAGCGTTTTAATATTTATACTTCATCTTCTGAGTCAGACGAAGAAAATTTAAATGCGGACTTCAGAAAACCTCCATCGCTCTCTGAGCCCAATAAAGTTCAACTTGATGATCCGGAAGATAATTTACCTTTATCAGAACTGAAAAAACATCCTGAGAAATCACCATTCCACAAACAAATCCCCACTCCTAATTTCGCTACAATTAAATACAAACCTAGAAGAAAAGCGATGAATTATATAGGCCAAAAAATAACTAAAGATTTGTTTGATACTTCTAAAGAAAAAACGGCGCAGAACACTAAAAGAAAAACCAAAAAAACTAAACCAAGCAGACGCCCAAGTGACGCTGATACAACTAAAAATTTGCAACTTACAAAAAACCAGAGACAGAAAGGAAAACAACCGAGTGACTCTAATAAAGGTAAAAAAGAACTAAACCAGGAAAAAGGTAATGAGCTTAAAAGAGTACCGAGAGAAAGACGACTGAATGCAGATATTAATAAGAAGATGACAAAAACAAGTAAGAAGAAGGAATCTAAAACACTCGAAAAACATGGTtggtattgtcatggatgcaaggtggatagacttgatgatatgcgtcaatgccaaaaatgccaaaaatggtatcatgaagtctgtgtgggtttaaccaaagacgatgaggagcaattcatatgcccagagtgcaattaa
- Protein Sequence
- MEPSTKKRRGEWTETQLKSALQAVKTCQMSQRKAAETYGIPRRTLRNHIESGSVEKITGRVPILNKSQEKDLCKRIIRLSQIGMPLTPKIVRKQAYEFCKANNVPNLFSDKKNIAGKKWLTNFVKRNPEISLRRAQLLNPARAQKLNKPIVSKHFEALKDIYDEINISTHPERLYNMDEKGCRLTLHHQQKVFAAKGTKRVHFVSQEHAENVTIAMCVSATGNTVPPIIIFKGKRLRPEFCDNLPPGSLVKMAPKGSMPTELFVDFIHHLGQNKSPGKCLLIFDGASSHLDARIVDAADAHDIVLYCLPSNTTHELQPLDKSVNKSFEHFWDEEVLLYAYQHPERKLTKTRFTKIFTKVWSKCMTKDNIISGFRATGLFPYDPNAIPEEAYAPSVLTLMPDPQVGSSSRMPDSVSNSSPSRDSIPRSPAMYPRCDNHSDENFSNHEEEDRNLSPSILIHDDVSPNHGNYVEIIESYPQSPTFVKKIVDYSSSFEDFNMDNSENQDPIQKLPVLEKYNRSTEFCSPVPTISGLNKQPLIPRLGSRTPDLSENEDFDEALQKIKNSTKRFNIYTSSSESDEENLNADFRKPPSLSEPNKVQLDDPEDNLPLSELKKHPEKSPFHKQIPTPNFATIKYKPRRKAMNYIGQKITKDLFDTSKEKTAQNTKRKTKKTKPSRRPSDADTTKNLQLTKNQRQKGKQPSDSNKGKKELNQEKGNELKRVPRERRLNADINKKMTKTSKKKESKTLEKHGWYCHGCKVDRLDDMRQCQKCQKWYHEVCVGLTKDDEEQFICPECN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01166530;
- 90% Identity
- iTF_01091652;
- 80% Identity
- -