Lcom019092.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- -
- Assembly
- GCA_958295575.1
- Location
- OY282473.1:20053624-20080130[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.023 4.8e+02 2.1 0.0 36 48 60 72 40 75 0.74 2 4 3.4e-05 0.71 11.2 0.0 19 48 144 175 139 179 0.81 3 4 0.00067 14 7.1 0.0 18 44 223 253 210 260 0.74 4 4 0.0075 1.6e+02 3.7 0.1 18 36 305 323 292 338 0.79
Sequence Information
- Coding Sequence
- ATGGTAAAGACAATGGTATTATTTCTGAAGAGGTATAATAAAGATCTGGAGATTTCTGAATTCGtaaaagatttgaagagaaaaGAAATTTCAGAAGTTTGGAAGTATTTTCTCAAAAACGAAGATAAATCGTATGCTGAATGTACTTTATGCGATGAAGAATTTAAATGCAATGCTGATACAACAGAACTGAAGAAACATTTAGAATCAAGACACAAAATAACGTTGGACACTATCAAAAAAGTTATATTTGTCGAAGTCGAAGTTGGAGCGAAGGTGGAGGAGATCATGGAGTACATAAAGATGGAGACTATGTTCATCCTGAGAGTTCAAAGGTTAAAGTTGCATCACAAGATTAACTTCAAAACGTACGgTTTGAATCCAAACCATAAAAGAAATCGCTCTTCAGTCTGGGAATCGTTCATCAAAAGCAAAGACAAATTAACTGCAAAATGTAAAATATGTGGAAAAGTAATGAAAGTCTACGGAACTTCGGCATTAAGACGTCATTTGGAAGCAAAACACGAAACCCAGGAAGCAGctgaaattatgtattttgtcgACACTGACGAGAATGATACAGAAAATGAAGATGAGACGGAGTTTACAAACGCGATACTTAATCATCCGAATACTGAACCTTCTCTTGGCTGGAAATATTTCCTCAGAAGTAAAGATAAACTGTCAGCAAAGTGTAAAATATGCCACAAAGTGATAAAATGTGGCAAATACTCCACTTCAGGATTATTGCGACATTTACCGAAACATTTTAAACATAAAGAGGCTATGGACGTATATCCTTCTTCTTTGGAAAACAAGAATAAGGCTGAAAATAAagacgaTACAGAATTTTTAGACCCTGTACTGAATCATCCGAATTCTGAGCCTTCTCCTGTATGGAAATATTTTCTCAGAAGTAAAGACAAACTCCGGGCAAAATGTAGAATATGTTGCAAAGTGATAAAATGCACTGACGGCTCCACTTCGGGACTACTGAGACATATACCAAAGCACTCAAATGAACAACTGACTAAGAATAAAAGTCATGTTGTCAAGTTGAAAATCAAGGAGGAAAGCGATTCAGAAGGCTGCATCGTCCATTACCAAGGTCGTCGTTTCCTCACGTACCAAGGCTTCAAGTTCACCCGTCAAAGAGACACAGCCACAACTACGAGATGGCAGTGTTCCAGGAGAAGTAAAGGTGGCTGCGTAGCCGCTATCTCCACGACCAAAGATgatcaaattattattagaacAAATGTTGATCATAATCATCCCCCTCCTTATAACATACTGCAGCCTGGTCTTAAACCCTGGAAAGTTGAACTGCTGAAACAGTATCGTCAGACGTttgGTGAGACCTTATGCAAACTCAGCCTGAAGTCTGATTTCAAGAGACGAAGGCGTTTAGAGAATGAAATTCAAGACAAAGAAACTCCTCTATTAGGAGAAAGGCAGGACCAATTCGACCATTGGCCAATATGa
- Protein Sequence
- MVKTMVLFLKRYNKDLEISEFVKDLKRKEISEVWKYFLKNEDKSYAECTLCDEEFKCNADTTELKKHLESRHKITLDTIKKVIFVEVEVGAKVEEIMEYIKMETMFILRVQRLKLHHKINFKTYGLNPNHKRNRSSVWESFIKSKDKLTAKCKICGKVMKVYGTSALRRHLEAKHETQEAAEIMYFVDTDENDTENEDETEFTNAILNHPNTEPSLGWKYFLRSKDKLSAKCKICHKVIKCGKYSTSGLLRHLPKHFKHKEAMDVYPSSLENKNKAENKDDTEFLDPVLNHPNSEPSPVWKYFLRSKDKLRAKCRICCKVIKCTDGSTSGLLRHIPKHSNEQLTKNKSHVVKLKIKEESDSEGCIVHYQGRRFLTYQGFKFTRQRDTATTTRWQCSRRSKGGCVAAISTTKDDQIIIRTNVDHNHPPPYNILQPGLKPWKVELLKQYRQTFGETLCKLSLKSDFKRRRRLENEIQDKETPLLGERQDQFDHWPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00888451;
- 90% Identity
- iTF_00888451;
- 80% Identity
- iTF_00888451;