Lcom035375.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- -
- Assembly
- GCA_958295575.1
- Location
- OY282490.1:4601682-4609418[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00016 3.3 9.1 0.0 24 43 45 64 32 74 0.76 2 6 0.013 2.8e+02 2.9 0.0 14 44 298 328 295 333 0.83 3 6 0.00019 4 8.8 0.1 22 51 380 409 375 410 0.83 4 6 5.7e-05 1.2 10.5 0.2 21 48 407 433 405 438 0.89 5 6 0.039 8.1e+02 1.4 0.1 14 30 457 473 450 478 0.84 6 6 0.00035 7.2 8.0 0.2 14 46 485 517 474 522 0.82
Sequence Information
- Coding Sequence
- ATGCAAAAACTGTCGATGTGTCGGATTTGTTTAGTGGAGAATGTTCGCATGTATGTGGTTTCTAACAAAAACCTGCAGGAAATATATGAGAAGTTCACTGATACTCCATTAGTGTCTGAAGACAGTAGACCGATGCTCGCTTGTTACTTCTGCTACGCTAAACTTAAGCAATCATACCGGTTGAAGAGGAAGTGTCTTGAAGCTGAGACCTGGTTTGCTCAGATATTGAGTAAGGACTGTGAGacaaAACCTCGACTAAACCAAGACCAGTTACAGTTCTGCGGCTATGTTATAAGTCCTATAGAGTATGTCAGCATATTTGATGAATCTCAAACAAAAAACGACGCTATCAAAGAAGAGTTGCCAGTCGTTGGTGAAGGAAAAGATATCGAAAATCGAACTGAGTTAGCACACAAATTTCAAGACATAGAAGATGTGAATATAAAATATGAACATTCTGAATCAGAAAATATACCAGCACAATATTCTGATTCAGATGTTCCCTTCTTGGAATTCAAAACGGAATTTAAAGAAGAACCAGTAGATATACCAACATACTATTCTGGATCAATAGATATACCACCCCTCCAATCTGAATTCGATTCAGAAGATTATGTTAATCTAATGGAATTCAAAACAGAAGTGGTAGAAGATCAAGAAGTATCTAAGAAGAAGCTACAAATTAAAACGACCCAAAgCTCTGGCGCGGAATTACAGAAAAAAGACGAACGAAGAGCAAAACCAGAAGACACTACTACAACTCAGCAAAAGAAAACTAAACCACCAGACGTGAAAATTATTCGGAACACTCACAAACATACGGCCGAACATTCCACTGAATTAAAAGAATCTTTCACTGGTAGTAGTGCTAGTACTTTCAATTATATAAAGAAACCTATTCGAATAAATAACGGCGAAAAACAATACGAATGTAAAATTTGCTTGCGTAGTTTTAGAGAtgataatgatttaaaaaaacatgctGGAGTACACACTGGTACACCTTACAAGTGCAAATTATGTCAGCGAAATTTTACAGCTAAGGGAGCTCTAACAAAGCATATTCGTATACACAATGGTGAAAATCCTTATAAACGGAAAGAAAAACAGTTGAACAGTATTCCAAAACATTTGGGGGAAAGAACTTTCCAATGTGATATATGTCAGCGTATTTTTAGGGAAAAGGGCGGTTTAAGAAGACATATTCTTTTGCACTCcggtgaaaaaccttacaaatgtcaTGTATGTCAAAAAAGTTTCGCAGTGTCcagtaatttaaaaagacaTATTGAACGACACTCGGGTAataaaaatcttcataaatGTGACATATGTCAGCGAGGTTTTAGTGAAAAGTCTAGTTTAAAGAGACATAGAAGTgtacacactggtgaaaaaccttataAATGTGAAATATGTCAGCGTAGTTTTAGTGCAAAGGGTCCTTTAACAAAACATAAGCGGAagcacactggtgaaaaacctttcaaatgttATGTTTGTGAGCGTAACTTTAGTGATGCTAGTAATTTAAAGAGACATATACGAATTCACATGTCTGCCATGGAAGTGCATAGCGCCACTTTAGGAACAacggtagattttagtcagtaa
- Protein Sequence
- MQKLSMCRICLVENVRMYVVSNKNLQEIYEKFTDTPLVSEDSRPMLACYFCYAKLKQSYRLKRKCLEAETWFAQILSKDCETKPRLNQDQLQFCGYVISPIEYVSIFDESQTKNDAIKEELPVVGEGKDIENRTELAHKFQDIEDVNIKYEHSESENIPAQYSDSDVPFLEFKTEFKEEPVDIPTYYSGSIDIPPLQSEFDSEDYVNLMEFKTEVVEDQEVSKKKLQIKTTQSSGAELQKKDERRAKPEDTTTTQQKKTKPPDVKIIRNTHKHTAEHSTELKESFTGSSASTFNYIKKPIRINNGEKQYECKICLRSFRDDNDLKKHAGVHTGTPYKCKLCQRNFTAKGALTKHIRIHNGENPYKRKEKQLNSIPKHLGERTFQCDICQRIFREKGGLRRHILLHSGEKPYKCHVCQKSFAVSSNLKRHIERHSGNKNLHKCDICQRGFSEKSSLKRHRSVHTGEKPYKCEICQRSFSAKGPLTKHKRKHTGEKPFKCYVCERNFSDASNLKRHIRIHMSAMEVHSATLGTTVDFSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00888538;
- 90% Identity
- iTF_00888538;
- 80% Identity
- iTF_00888538;