Basic Information

Insect: Leucania comma
Gene Symbol: -
Assembly: GCA_958295575.1
Location: OY282465.1:13684497-13694957[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.9e-05 0.002 19.6 0.3 1 23 482 504 482 504 0.98

2 8 9.8e-07 0.0001 23.7 1.4 1 23 510 532 510 532 0.98

3 8 8.7e-06 0.00093 20.7 0.6 2 23 541 562 541 562 0.98

4 8 9.6e-06 0.001 20.5 0.7 1 23 568 590 568 590 0.99

5 8 1e-07 1.1e-05 26.7 2.1 1 23 596 618 596 618 0.98

6 8 6.2e-07 6.6e-05 24.3 1.3 1 23 624 646 624 646 0.97

7 8 0.0001 0.011 17.3 7.3 1 23 652 674 652 674 0.97

8 8 7.6e-05 0.0081 17.7 0.9 1 22 680 701 680 701 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.9e-05	0.002	19.6	0.3	1	23	482	504	482	504	0.98
2	8	9.8e-07	0.0001	23.7	1.4	1	23	510	532	510	532	0.98
3	8	8.7e-06	0.00093	20.7	0.6	2	23	541	562	541	562	0.98
4	8	9.6e-06	0.001	20.5	0.7	1	23	568	590	568	590	0.99
5	8	1e-07	1.1e-05	26.7	2.1	1	23	596	618	596	618	0.98
6	8	6.2e-07	6.6e-05	24.3	1.3	1	23	624	646	624	646	0.97
7	8	0.0001	0.011	17.3	7.3	1	23	652	674	652	674	0.97
8	8	7.6e-05	0.0081	17.7	0.9	1	22	680	701	680	701	0.95

Sequence Information

Coding Sequence: ATGTGTGAATGGCTATCGCACGGAGAGTGGTGCGATGTGAAACTCCTGTGCGGCGGGCGCGCATTTAGCGCACATCGAGCCGTGCTCGCCAGTGTTAGCACTTTTCTCAGACGTCTTCTTCTATCTTGCCCCACAGACGAGTCGCCGACTTTTATCGTTTTACCAGATTTTGACCTCGAGGCTATGTCGTCTGTGCTTTATTACATCTATAATGGAGAAGTTATTGtacaaaaagataaaattgaaatgtttctAGACATTGTAAAAgccatgcaaatatttgttgACAGTCAATATTTGCCGCAAATTTCTGATACATTAGATTATAATAATCTCGATTTAAGTTCTCACTTTGAATCTGATTTGTCGAAAAGGAATGTTTTCACATTAGGATTTGAAGGCTGTAGAGATCAacgatacataaatataaagaaaGGCAAAATAATCCAGGATGAATTACAGTATTCAGTTAGCAACGAAGATTGCAAAGATAAGCTAGTACGTAGTCAGAATCCAAGTGGAGAGCGTAAGTCTTCTTTAGGAAATCTGAAATCGCCGCTTGGAGACCGACAAAGGAACTCTTTTCTACGTGATTTATTTATCGAGACATATCCTCGAAACGGTAATGTTAACGGTCTGACGGCAGGCGTGCTAGCAATATCAAATGAATGCTATCGTACTCCGGCATCTGTGCTCTTGACGAATGCAAATGGCAAACATCTCAGCGACGGTTCACTCTTAGAGCCATATAAAAAAACGAACGAGCACATCAGTCATTCGCCTACAGTATTTCACCTTCGCCAGCAGCAGCAATGCACTCGAGATGAACCAGATTACGGTGAAACTAACAAAACGTTGTATGACCAATCTTGCCTAAAAGTTTGTGCGGCTGAGAGAAGTAAAAACACACATGCCTTCGACAATGACACAAATAATTTACCGATGAATATATTAATGAACCATGTGCCTATGTCAGCAAATTCTTTACTTCAGCTGGGGCTACCTGATCAGATTTTGTCACGAttttatgttccttctttggacTTTAGTATCGCACCATCAGTGTTCGATTCGATAAAACCAATGTCCGTTCATAGAAACAGATCGGTATTTGACAATGCAAGTGATGAAACCAGGAAAGAAATAGATGTAGCAACATCTTCTAGAGTAACTATTTTAAATCATGTATTAGAGAGTCCGTGGAGCCCTCGGATACCAAACAATTACAAACCATTTCGTAGAAAAACTGACGGTTCTTTGCAGTCACCATCGTCCAAACAAAAAGTTGCAAACGAAAAAAACATAGTTAATGATAACAATAACAATGTTTCAAAGCCAAATTTACCATCAATTACGGATAGTGTTAGCGAAGCGATGCCGGCCAGTAGTGTTTCGGCAAAATCGACAACAGTTTCATGTGTTCCGGACACCCGGAGAGATGACTTCAAGTGCACTCCTTGCAATCAGGTGTTTGCAAGTAGCGATTCTCTGGCGGTACACATGCGGCGGCATTCAGCGACGGCGCGGTATTCATGCGGCGAGTGCGGCAAGACGTTCTCGCAGCTGCGCAACTTCAAGTACCACATGTCCATCCACCGTGGCACCCGCGAGTTTGCCGCCACCTGTACCGTCTGCGGCAAGTACTTCAACGACAGAGGATATCTCAGCAGCCACATGAAGATTCATCGgaaCCGTAAAGAGTACAAGTGCACTCTTTGCCCCAAGTCCTTTAACCAACGCGTTGCGTACAACATGCATGTGAGGATCCACACAGgtgTAAAGCCGCATGTGTGCGAGGAGTGCGGCAAGGCTTTTTCTCGCAAGATGTTGCTGAAGCAGCACCAGCGCACGCACTCGGGCGAGCGTCCGTATGCGTGCCCGCACTGCGACAAGCGTTTTGCGGACCGCTCCAACATGACGCTACACTTGCGGCTACACACAGGAGTGAAGCCGTTTTCCTGCACGCTGTGCCCAAAGTCTTTCACAAAGAAGCACCATTTGAAGTCGCACCTGAACTTTCACACCGGTTCGAAGCCGTACTCGTGTCCGCGCTGCAAGCTCGCCTTCACCCAGTCCTCGAACATGAGGACGCACCTCAAGAAGTGTCGCGCTCCTGAACCTGTGCCCACTGAGACTCTTCAGCAAGGTGGAGATGTGACGATGCAGACGTAG
Protein Sequence: MCEWLSHGEWCDVKLLCGGRAFSAHRAVLASVSTFLRRLLLSCPTDESPTFIVLPDFDLEAMSSVLYYIYNGEVIVQKDKIEMFLDIVKAMQIFVDSQYLPQISDTLDYNNLDLSSHFESDLSKRNVFTLGFEGCRDQRYINIKKGKIIQDELQYSVSNEDCKDKLVRSQNPSGERKSSLGNLKSPLGDRQRNSFLRDLFIETYPRNGNVNGLTAGVLAISNECYRTPASVLLTNANGKHLSDGSLLEPYKKTNEHISHSPTVFHLRQQQQCTRDEPDYGETNKTLYDQSCLKVCAAERSKNTHAFDNDTNNLPMNILMNHVPMSANSLLQLGLPDQILSRFYVPSLDFSIAPSVFDSIKPMSVHRNRSVFDNASDETRKEIDVATSSRVTILNHVLESPWSPRIPNNYKPFRRKTDGSLQSPSSKQKVANEKNIVNDNNNNVSKPNLPSITDSVSEAMPASSVSAKSTTVSCVPDTRRDDFKCTPCNQVFASSDSLAVHMRRHSATARYSCGECGKTFSQLRNFKYHMSIHRGTREFAATCTVCGKYFNDRGYLSSHMKIHRNRKEYKCTLCPKSFNQRVAYNMHVRIHTGVKPHVCEECGKAFSRKMLLKQHQRTHSGERPYACPHCDKRFADRSNMTLHLRLHTGVKPFSCTLCPKSFTKKHHLKSHLNFHTGSKPYSCPRCKLAFTQSSNMRTHLKKCRAPEPVPTETLQQGGDVTMQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00622996;
90% Identity: iTF_01030400;
80% Identity: iTF_00888430;