Basic Information

Insect: Leucania comma
Gene Symbol: ham
Assembly: GCA_958295575.1
Location: OY282479.1:9364386-9407914[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.018 2 10.2 0.1 2 23 244 266 243 266 0.96

2 9 0.0011 0.11 14.1 0.8 1 23 273 296 273 296 0.93

3 9 2.2e-08 2.4e-06 28.8 0.1 1 23 302 325 302 325 0.96

4 9 1.9e-06 0.00021 22.7 1.7 1 23 331 353 331 353 0.95

5 9 6.8e-05 0.0073 17.9 6.1 1 23 359 381 359 381 0.99

6 9 0.00014 0.015 16.9 0.4 2 21 389 408 388 409 0.94

7 9 1.6e-08 1.8e-06 29.2 0.7 1 23 806 828 806 828 0.98

8 9 5.9e-07 6.3e-05 24.3 1.7 1 23 834 857 834 857 0.97

9 9 2.2e-05 0.0024 19.4 3.2 1 23 863 885 863 885 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.018	2	10.2	0.1	2	23	244	266	243	266	0.96
2	9	0.0011	0.11	14.1	0.8	1	23	273	296	273	296	0.93
3	9	2.2e-08	2.4e-06	28.8	0.1	1	23	302	325	302	325	0.96
4	9	1.9e-06	0.00021	22.7	1.7	1	23	331	353	331	353	0.95
5	9	6.8e-05	0.0073	17.9	6.1	1	23	359	381	359	381	0.99
6	9	0.00014	0.015	16.9	0.4	2	21	389	408	388	409	0.94
7	9	1.6e-08	1.8e-06	29.2	0.7	1	23	806	828	806	828	0.98
8	9	5.9e-07	6.3e-05	24.3	1.7	1	23	834	857	834	857	0.97
9	9	2.2e-05	0.0024	19.4	3.2	1	23	863	885	863	885	0.98

Sequence Information

Coding Sequence: atgcCTAATACAGCAGCAGACAGTCAAGAGTCTGGCAGTCCACCGCCGAGCCCGACTGACTCTACCACGTCAGAATCAGCGCCCACCTTAGTTCACATCAAGCAAGAAAACATGCCTCCAGGAACAGACATTAAGGAGTACTACGGTACTCTAGACTTTGGTCTCTCAGACACGTATCTACCAAATAATTTCCCCGATTATGGAAGAGGGTACCTCCCTAGACCTCTGGATCATATAAAATCAGTCAAAAACGAAGATGGGGTTAAAGATGATGAACCAGGGGACAAAGACTTTATCCTACCTAGTGAATTGATGTTCAAAAGTGGAGGGATCTTTGCTAGAGCTAATATTGCGAATGGGACTCAATATGGACCTTTTTTGGGATCGTTAGAAAGTCAGCCGAAGGACCGACGGTTTGCTTGGGAGGTCCGCGACAAAAGTGGTGTCAGTGGCTGGTTGGACGCGACGTCCGAGAAAGGGAACTGGCTCAAACTGGTGCGCTCCACGAACTACCCTCATGACGTCAACGTACAACACCTTTTGTTGGCTGGACAGGTGTGGTACAAGGTTGTACGCGAGGTTCCCGCCGGCCAGGAGTTGCTGCTGGGTCCTCGAACACCCATCTACTTGGAGGACGTGCTCTCTTTGGACTCAAAGCGTCAGTCTGCCATCGAGAAGTTCAGTTCCCTGGCGTCAGCTGACGACGAGGAGAGAGAGGACGCTGACATCCGCTGCAGTTTCTGCGATCAACCTTTCCCTAACATCGATGTTCTCGATCGTCACTTGATAACGGAGCACGCTCAGCCGGCCGCTGCATTTCATTGCGAACTCTGTAACAGGGCTTACAGCACTCGGGTACTGCTCCTACGACACCGTGCTCTTGCGCATACCGACATCAGAAAGTACCCCTGCGAAAACTGCCCTAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATTCGCGCGCAGCACGCGGGCGCTCGCAGCCACGCCTGTCCCGAATGCGGAAAGACCTTCGCGACATCCTCCGGCCTGAAAcagcacacacacatacactccAGCGTCAAGCCCTTCCAGTGCAAGGTCTGCTTTAAGGCATATACCCAGTTCTCCAACCTTTGCCGTCACAAACGGATGCACGTCGCCTGCCGAGCTCTCGTTGAATGTGGAAAATGTGGCCAGTCCTTCACATCTTACGCCTCTCTTACTAAGCACAAGAGATTCTGCGACACCGCTGCTGCAGCTTCAGTCAACCTCCGAGGACAAATGCCCCAGGGCCTTCCGCAAATATCATCACTACAAAACGTCGGGATGAATAACCCTAATAACTCCAACCCATTCCCGATGTACAGGGGACCCACTTTACCCCTGCCATACAACACATTTGCTCACTATCCGGCGCTGTTCTCTGCCGCTGCTGCTGCAGCCTGTCCACCCGAGTTCCTCAGCCCACTACTCTTCAACGTACAAGGAGCTAGACTCGCTATGGAACACGACATGGCCATGTCTAATGCCAATTTAGTATCCAAACAACAAGAAGGCCGCCTATCAGTAAAAAGCATGGACAGCTCAAACTCTTTAGATGATAACAAGAAGCCTAAGGATTTGGATTTCGAAAACAAAAGAGACAGCTATAGTTCAGATAGGGCTACGCCCAACAAATCACATAGTCTTTATTCTAAGCAATCACCTCCTTCCGGGGAGGAAGCATCTTCCCAACGCCGACCATCACCAGTAATGCCACTTCCCGCACCGATTGCTCCGTTCAATTTCTCAAGAGACGATATGAAGCGGGAGTCTCCGTTCAACTTCTCTCTCAAGCTCAATAATAACGACATTCAGGGTAAAAAGTCTTTATCACCATTACCAAAAGACTTGTCCAAGAACGTAATCGAAGACGATAAAATTTCTGATTATTCTGATGTAGAAGAAGATACAAAGAAAGATGATGGCGATCAGCCTTTGGATCTATCGGTGTCAAGAAAACAGAACGGTAAGGATTCCGAAGCAGAGAATGATGATCGTTCCTTTCGCAACTCAGTCAAGTCGTATTCACCACCTGAAAGCCCAGCTGAGAGGAGTAAGACTCCCGAAAATGACACAACCGACGTCGATGTTGAAGGCGTCGAGCCTAAAAGGGGGGAATCTCCACCGCAGCTAGTATCTCCACCTTTGGCGTTCCCGATGCCAGTTCATCCGCAGCACAGCAACTTAATCGATGCTATGTACCGGCCTCGATTCCCATCTTTCCACACGTCCGAATCACTTCTAAACTCGTCGCACTCCCCTTACGTTCCGAGTCCGTTCAATTTTTTATCCCCACTTCTCGGTACTGATGGACCTGATAGGCAACCAAGCGCGTATGCAAAGTTTCAAGAACTTAGTTCAGGATCAGGAAAGCTGCGTGACAGGTACGCTTGCAAATTCTGCGGAAAAGTGTTCCCGCGGAGTGCGAACCTCACACGTCATCTACGTACACACACCGGTGAGCAGCCCTACAAGTGCAAGTACTGTGAGCGCTCGTTTTCGATCTCATCGAACCTCCAGCGGCACGTGAGGAATATTCACAACAAGGAGCGTCCGTTTCGGTGTCCCTTGTGCGAGAGATGTTTCGGACAGCAGACGAATCTCGATCGCCACTTGAAGAAGCACGAGGCGGAGGGGGGAGATTCCCCTAGCTCTGCGGATACTGAAAGGGAGGATGCGTACTTTGATGACATTCGGTCGTTCATGGGGAAAGTGACGTGTTCGCCGGGTGCACGGTCCCCGGCGGCGACGCCCCCGCACGGAGCGCACGGCGCGCACGCCGCGCACGGCCCGCGCCCGTCGCTGGCTATCTCCACATAG
Protein Sequence: MPNTAADSQESGSPPPSPTDSTTSESAPTLVHIKQENMPPGTDIKEYYGTLDFGLSDTYLPNNFPDYGRGYLPRPLDHIKSVKNEDGVKDDEPGDKDFILPSELMFKSGGIFARANIANGTQYGPFLGSLESQPKDRRFAWEVRDKSGVSGWLDATSEKGNWLKLVRSTNYPHDVNVQHLLLAGQVWYKVVREVPAGQELLLGPRTPIYLEDVLSLDSKRQSAIEKFSSLASADDEEREDADIRCSFCDQPFPNIDVLDRHLITEHAQPAAAFHCELCNRAYSTRVLLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHAGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHVACRALVECGKCGQSFTSYASLTKHKRFCDTAAAASVNLRGQMPQGLPQISSLQNVGMNNPNNSNPFPMYRGPTLPLPYNTFAHYPALFSAAAAAACPPEFLSPLLFNVQGARLAMEHDMAMSNANLVSKQQEGRLSVKSMDSSNSLDDNKKPKDLDFENKRDSYSSDRATPNKSHSLYSKQSPPSGEEASSQRRPSPVMPLPAPIAPFNFSRDDMKRESPFNFSLKLNNNDIQGKKSLSPLPKDLSKNVIEDDKISDYSDVEEDTKKDDGDQPLDLSVSRKQNGKDSEAENDDRSFRNSVKSYSPPESPAERSKTPENDTTDVDVEGVEPKRGESPPQLVSPPLAFPMPVHPQHSNLIDAMYRPRFPSFHTSESLLNSSHSPYVPSPFNFLSPLLGTDGPDRQPSAYAKFQELSSGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCERCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPGARSPAATPPHGAHGAHAAHGPRPSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00441779;
90% Identity: iTF_00177403;
80% Identity: -