Lcom008438.1
Basic Information
- Insect
- Leucania comma
- Gene Symbol
- rfx7.L
- Assembly
- GCA_958295575.1
- Location
- OY282464.1:13953106-13955438[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-29 5.5e-25 88.9 0.0 3 69 150 216 148 216 0.98
Sequence Information
- Coding Sequence
- ATGGATAGTACAAGTCCATTTCAACCTTGGGCTACTGACGATAGTGCAAAAAATGTTAAAACTGAGCGAGAACTAGTGGATGACGCGAAACTTCATCGGGAAAATGTCAATCATCCAAAACATAGGCAAACTGCGTCTTACAATAAAGAAAGTGTCGCCGTCCCAAGCAGCGCTCCGGGATCGTCGAGCTCCACGGCCCCCGGCAGCGAGCCCGCGCGTGGCAGCGAGTCCAACATGGACTCGGGCAAAATAGCTTCCATGCAGCAGATAGTCGAGAACACCCTCAGTCAGGAGGGTCGACAGAGAGTGGCCCAGCTGCTCGAAGCAGTGGAAGCACTCAGCGGTGCCGAGAGATTACTGCTGTACCTACGTTTGCCCACTGGGGTGCCTCAACATGATCCTCTCAAACAACCAATCAATCCACTGGGCTCACgGGCTGAACTTCAGCAGACTGTAACTTGGATACAGACCCACTTAGAAGTCGACCCGGATGTATCATTACCCAAGCAGGATGTGTATGATGAATATATTGCACATTGTATGAGCAGTAATATGAAGCCACTCTCTACAGCGGATTTTGGGAAAGTAATGAAGCAGGTATATCCAACCGTGCGGCCGCGGCGGCTGGGGACGCGCGGTAATTCCaggtaa
- Protein Sequence
- MDSTSPFQPWATDDSAKNVKTERELVDDAKLHRENVNHPKHRQTASYNKESVAVPSSAPGSSSSTAPGSEPARGSESNMDSGKIASMQQIVENTLSQEGRQRVAQLLEAVEALSGAERLLLYLRLPTGVPQHDPLKQPINPLGSRAELQQTVTWIQTHLEVDPDVSLPKQDVYDEYIAHCMSSNMKPLSTADFGKVMKQVYPTVRPRRLGTRGNSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00888927;
- 90% Identity
- iTF_01030860; iTF_01028952; iTF_01534529; iTF_00726020; iTF_01531700; iTF_01339680; iTF_01246564; iTF_00120226; iTF_01025701; iTF_00037514; iTF_01083980; iTF_01439629; iTF_00040527; iTF_00448754; iTF_00622547; iTF_00757875; iTF_00039512; iTF_00041514; iTF_01027032; iTF_00374905; iTF_00172466; iTF_00771611; iTF_01424785; iTF_01341952; iTF_00952444; iTF_01116893; iTF_01117987; iTF_00667098; iTF_00123966; iTF_01092802; iTF_00123081; iTF_01264139; iTF_01338219; iTF_00121134; iTF_01027982; iTF_00745361; iTF_00425107; iTF_00445843; iTF_01526751; iTF_01440726; iTF_00446848; iTF_00444844;
- 80% Identity
- iTF_01025701; iTF_01030860; iTF_01028952;