Basic Information

Insect: Leptura quadrifasciata
Gene Symbol: -
Assembly: GCA_963675555.1
Location: OY776677.1:25694574-25707706[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.6e-05 0.0086 18.6 0.7 1 23 143 165 143 165 0.95

2 15 0.0021 0.39 13.4 1.2 3 23 173 193 172 193 0.99

3 15 0.0007 0.13 14.9 0.3 1 23 301 323 301 323 0.98

4 15 0.024 4.4 10.1 0.2 1 23 330 353 330 353 0.94

5 15 1.5e-06 0.00027 23.3 3.8 1 23 377 399 377 399 0.98

6 15 0.019 3.5 10.4 0.0 1 23 412 434 412 434 0.94

7 15 1.7 3.2e+02 4.2 0.0 1 23 440 463 440 463 0.88

8 15 0.099 18 8.1 1.9 2 19 471 488 471 489 0.96

9 15 1.2e-05 0.0022 20.4 3.7 1 23 498 520 498 520 0.97

10 15 0.0069 1.3 11.7 0.3 2 23 526 547 525 547 0.97

11 15 1.5e-05 0.0028 20.1 0.4 1 23 555 577 555 577 0.98

12 15 0.0065 1.2 11.8 0.2 3 23 585 605 583 605 0.97

13 15 0.00021 0.038 16.5 0.3 1 23 611 633 611 634 0.95

14 15 1.6 3e+02 4.3 1.1 1 23 648 670 648 670 0.96

15 15 0.00071 0.13 14.9 0.1 1 20 1026 1045 1026 1048 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.6e-05	0.0086	18.6	0.7	1	23	143	165	143	165	0.95
2	15	0.0021	0.39	13.4	1.2	3	23	173	193	172	193	0.99
3	15	0.0007	0.13	14.9	0.3	1	23	301	323	301	323	0.98
4	15	0.024	4.4	10.1	0.2	1	23	330	353	330	353	0.94
5	15	1.5e-06	0.00027	23.3	3.8	1	23	377	399	377	399	0.98
6	15	0.019	3.5	10.4	0.0	1	23	412	434	412	434	0.94
7	15	1.7	3.2e+02	4.2	0.0	1	23	440	463	440	463	0.88
8	15	0.099	18	8.1	1.9	2	19	471	488	471	489	0.96
9	15	1.2e-05	0.0022	20.4	3.7	1	23	498	520	498	520	0.97
10	15	0.0069	1.3	11.7	0.3	2	23	526	547	525	547	0.97
11	15	1.5e-05	0.0028	20.1	0.4	1	23	555	577	555	577	0.98
12	15	0.0065	1.2	11.8	0.2	3	23	585	605	583	605	0.97
13	15	0.00021	0.038	16.5	0.3	1	23	611	633	611	634	0.95
14	15	1.6	3e+02	4.3	1.1	1	23	648	670	648	670	0.96
15	15	0.00071	0.13	14.9	0.1	1	20	1026	1045	1026	1048	0.94

Sequence Information

Coding Sequence: ATGGAGGAATCTTTTGGTTTAACCTGGGAGGATGCGACGACCGTCGTTCAGTCCGAAGAGGTCATTTGTGGCATCGAAAATGAAATCCTCCCAGCTGAAACGGAAGAGTTTACTGGGGTTCCAGAAGGAGTAGCTGAAGAGGTGATCCAAGACACACCTGAAAATGGACAAGGGGAGATGCCAGTGGAGAGAATTATGTATCTTACTGATGGAAATGTGCTAGTCATGCAAGAAGCAACGGAACCTACATACCAGGAGCAGTTGATGGTGTCCGAGGAAATTATTACAGACCAATGGGGTGAAAGCTGTCCAGAAGaaatagttGTGGGCTCAGAGGAAGCCGTCGGAGGCACAGAGGAACCAAGCCAGGAAGATTGCGATATTCCTCTACCTACTGATCAAGATGAATACACAGCTGCTAGACCATATCCCTGTGATTTTTGCAGCAGGAGGTTCAGAAAGAAAGCCAACCTAATGAACCATATGGTGGCTCATCAAACAGATAGACCACATGGGTGTAACCTATGCGGTGTAAGGTACATAAGAAAGTGTGACTTAATGAACCATCTTAAAATACATGCTTACATACCGGAGGCTGATGGGTTGGAAGAGGAGGAGGTACAACCGTTGGAGGAATCTATAGATGTTGAGAAGGGAAGGAAGAGAGGTAAGCAAGTGGCGAAGAGGAGAAAGAAGGGCAAAATCAAGGAGGAGAGGGAATATGATCCTTATGAGCCAGATGATACAGCTGCGTCTAGTTCTCGATCTTACAACTATGTTGATGAAGACATGAAGTTAATGGAACAAATGGAAAACAATGTAAAGTCAGATTATGGTGAATATATACCAGAAGACCATACCACAGAAGTCAGATACCCAATAACAGATCCCAGGAAACCCTTTGTATGTCAGCACTGCGGTGTCGGTTTTGCTAGAGAAAAAGCCATGGTGTCTCATACAAGGGTGCACGCTGAAGGCGATAGTCCCTTTGAATGCCAGAAGTGCGGAGAAATGTTCTGGGATCCAGCCCAGATGCGGGATCATGCAAAGCAAAAACACGGTGATATTGAAGATTTTGATGATGATGAGGATGAGGACTATTCGGATGAGGAAACTAAGTATGGTACATTTTATTGTTCAACTTGTGGTTTATCTTTTCATAGACAAGACAATTTGAGACGCCATCAACGCGTCCACGTTAAAGAGGAGTACGTTAACGAGCATGAATTTGGTCATATTTGTAATGTGTGTGGAGAATCGTTCCAGGAAGCTCTCGACCTGCTGGCACACGCTGAGGTGCATGCTCGTGGAACTGAGCACCGTTGCATGATTTGTGGAGAAAGTGCTGCCGATGAAAATGCCGTTGCTGTTCACGTTCAGGCAAAACATGGCAAGACCTTGCCACCAAACACCTGCATGCTTTGCGGTAGGACTTGCAAAGACAGACGAACTCTTCTAAAGCACTCTTGGGAGCATTCCAAAGAAAAGATGTTTGCTTGCAGCAAGTGCGGCAAGACCTTCCACAACAAGGCAAGGTTGAAAAGGCACATGTTGTCACATAGGAATAAGGTTGTCACCTGCGATGTTTGCGGTGAAGATTTTCCTGATGGTAGATCACTGATGAACCATCGGCATAGTCATAGTAGCGTTTCCGGCAGGCAATTTCCGTGCAGAGAGTGTGGAAAAACATTTGGTTCAAGAAGCTCACAACAAATTCATATTAGGATCCATACAGGTGAAAGGCCTTATGGTTGTCGATTCTGCTGGAAAGCCTTCGCCGATGGTGGCACTTTACGAAAACACGAACGTATCCATACTGGAGAAAAACCCTATGCCTGTGCGGTATGTCCTAGAGCTTTCAATCAGCGTGTAGTCTTGAGAGAACATATTCGTTCTCACCATTCAGGTCCGGACCCCAAGTACACCCACAGTATGACTCCCTACTGCTGCTCTGTCTGCTCAGACATGTTTGCGGCATCCCAAGATTTGATTCTACACTTAATTCACCACTGCGACATGAATACTGCCATGAAACGGCAGCCTCAAGTCGGACCGAGGAAGTACAAGCGCAGGAGGAAGCTGAAACCCCATGAATTGGAGATGATATCGAACCGAATCGAGgatgatgacaatgacaatttagAAGATGACGATGACAACTTCACCGATTCTGAAGAAGAACGAGAGCGCAGAAAGAAGAACACCAGAAGATCGACCAAGAAAACCTCTACATCTCCAAAGGAACAAATCACAGAAACTTACACCGACCTGTACAACAGCTGTTCCTCTGCTATAGAAAATATAAACTCAATCGTCAATTCTAAGTCAACGCCGATCAAAAATAAGCCTAAGAAGGTGAAGGATCAGACGATGCCTTCAAGGCCAAAGATGATTCACACACAGAAGACAAGAGTTCCTGTAGAAACCGGAGAGGATGGGAAAGTGAGGCACAAGACTAAGACTTTGATTACTAGGACACAGCCTACTGAAATTAAGTCTGCTACAGGTGAAAGGATAAGGCCCAGGACGAAGAACGTGAGTTATCACATCTTGCAAACAGAGAAGTTGCCTCTTGCAACGTTTCCAGAGTCGGATAGAGACACACAACAAGCAGTCGATAGCTTATTGAGGGAAGAAAGCGGCACGGATGGTGATCCCCAACAGAGCAATGGCATTATATACATGGACCAGATCGAGCAACCTCCTGAAGTAGCAGCCGAGCAAACAGTAGAAAGTGAAGTACCAATCCCCATTGCAATGGTCGAAGTAAAGAAAAGAACAAGAAGCACGAGCAACAGCCTTAAGCCAGGCCGCCACATTATAGGTCCGGGAAGTAAAGTGCGGTTAGTAAAAGAGGGCATGATAGTGTCGaaggtgaaaaataaaaagtcGGATGACAACGAGCCAGAATCGATCCTGCCTGACCTTTCGCACCCGCCTATGGTTATAAAAGAGGAAATTGTTCACCACCCCATCGTCAGTGTCAACGTCAAACAGGAAATAATGGATCCTAGTCCCCTGCACGAACTCGCCGAGATCTCGATGCAGCACGCAAACGCGACTGCGCAGAATCTATTCAAGTGTGAGATGTGCAGTGAAGTGTTCTCTGATAGGGCTCAGTTGTTGGTGCACGTGCCCATACACATTTGA
Protein Sequence: MEESFGLTWEDATTVVQSEEVICGIENEILPAETEEFTGVPEGVAEEVIQDTPENGQGEMPVERIMYLTDGNVLVMQEATEPTYQEQLMVSEEIITDQWGESCPEEIVVGSEEAVGGTEEPSQEDCDIPLPTDQDEYTAARPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGVRYIRKCDLMNHLKIHAYIPEADGLEEEEVQPLEESIDVEKGRKRGKQVAKRRKKGKIKEEREYDPYEPDDTAASSSRSYNYVDEDMKLMEQMENNVKSDYGEYIPEDHTTEVRYPITDPRKPFVCQHCGVGFAREKAMVSHTRVHAEGDSPFECQKCGEMFWDPAQMRDHAKQKHGDIEDFDDDEDEDYSDEETKYGTFYCSTCGLSFHRQDNLRRHQRVHVKEEYVNEHEFGHICNVCGESFQEALDLLAHAEVHARGTEHRCMICGESAADENAVAVHVQAKHGKTLPPNTCMLCGRTCKDRRTLLKHSWEHSKEKMFACSKCGKTFHNKARLKRHMLSHRNKVVTCDVCGEDFPDGRSLMNHRHSHSSVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYTHSMTPYCCSVCSDMFAASQDLILHLIHHCDMNTAMKRQPQVGPRKYKRRRKLKPHELEMISNRIEDDDNDNLEDDDDNFTDSEEERERRKKNTRRSTKKTSTSPKEQITETYTDLYNSCSSAIENINSIVNSKSTPIKNKPKKVKDQTMPSRPKMIHTQKTRVPVETGEDGKVRHKTKTLITRTQPTEIKSATGERIRPRTKNVSYHILQTEKLPLATFPESDRDTQQAVDSLLREESGTDGDPQQSNGIIYMDQIEQPPEVAAEQTVESEVPIPIAMVEVKKRTRSTSNSLKPGRHIIGPGSKVRLVKEGMIVSKVKNKKSDDNEPESILPDLSHPPMVIKEEIVHHPIVSVNVKQEIMDPSPLHELAEISMQHANATAQNLFKCEMCSEVFSDRAQLLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00110794;
90% Identity: iTF_01290627;
80% Identity: -