Basic Information

Insect: Leptura quadrifasciata
Gene Symbol: -
Assembly: GCA_963675555.1
Location: OY776676.1:32557504-32571160[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0086 1.6 11.4 3.8 1 23 146 168 146 168 0.97

2 16 0.0055 1 12.1 2.5 3 23 176 196 175 196 0.96

3 16 0.00011 0.021 17.4 2.1 1 23 203 225 203 225 0.96

4 16 0.00064 0.12 15.0 0.9 1 23 317 339 317 339 0.99

5 16 3.2e-06 0.00059 22.2 6.4 3 23 347 367 346 367 0.98

6 16 0.00064 0.12 15.0 2.9 2 23 391 413 390 413 0.96

7 16 1.3e-05 0.0025 20.3 1.7 3 23 499 519 497 519 0.96

8 16 0.00077 0.14 14.7 0.7 1 23 525 548 525 548 0.92

9 16 2.3e-06 0.00042 22.7 0.8 1 23 553 575 553 575 0.98

10 16 1.5e-05 0.0027 20.1 0.6 2 23 586 607 585 607 0.97

11 16 3.5e-07 6.6e-05 25.2 0.9 1 23 614 636 614 636 0.97

12 16 4.1e-05 0.0075 18.8 1.6 3 23 648 668 646 668 0.92

13 16 0.00013 0.025 17.1 4.4 1 23 674 696 674 696 0.99

14 16 5.6e-05 0.01 18.3 1.7 1 23 702 724 702 724 0.96

15 16 1.2e-07 2.3e-05 26.7 0.4 1 23 730 752 730 752 0.99

16 16 0.00019 0.036 16.6 0.1 1 23 758 782 758 782 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0086	1.6	11.4	3.8	1	23	146	168	146	168	0.97
2	16	0.0055	1	12.1	2.5	3	23	176	196	175	196	0.96
3	16	0.00011	0.021	17.4	2.1	1	23	203	225	203	225	0.96
4	16	0.00064	0.12	15.0	0.9	1	23	317	339	317	339	0.99
5	16	3.2e-06	0.00059	22.2	6.4	3	23	347	367	346	367	0.98
6	16	0.00064	0.12	15.0	2.9	2	23	391	413	390	413	0.96
7	16	1.3e-05	0.0025	20.3	1.7	3	23	499	519	497	519	0.96
8	16	0.00077	0.14	14.7	0.7	1	23	525	548	525	548	0.92
9	16	2.3e-06	0.00042	22.7	0.8	1	23	553	575	553	575	0.98
10	16	1.5e-05	0.0027	20.1	0.6	2	23	586	607	585	607	0.97
11	16	3.5e-07	6.6e-05	25.2	0.9	1	23	614	636	614	636	0.97
12	16	4.1e-05	0.0075	18.8	1.6	3	23	648	668	646	668	0.92
13	16	0.00013	0.025	17.1	4.4	1	23	674	696	674	696	0.99
14	16	5.6e-05	0.01	18.3	1.7	1	23	702	724	702	724	0.96
15	16	1.2e-07	2.3e-05	26.7	0.4	1	23	730	752	730	752	0.99
16	16	0.00019	0.036	16.6	0.1	1	23	758	782	758	782	0.93

Sequence Information

Coding Sequence: ATGATTACTAAAGAAATAGAGTTGATAATAGATAAGATCTGTCGTTGCTGCATGTGTGAGAATGAAAATATGCACAATGTGTTCGAAAATAAAAAAGATGCAGACGGCTCCTCCTCAATACTTCTTTCAGAAATGTTGATAGCTTGTGCCTCTGTGGAGGTGGCTTTCGGAGATGGACTGCCATATAACTTGTGTGACTCATGCGAAAGCAAATTAAATACAGCATATGAATTCAGACAACAATGCCAAAAAACAGATTCAGCACTCAGGGAATTAGCAAATACTGAATCGAAAGATAACATAACAAAACAAGAAGATATTATAATCCAACCAGATGTTCATGATAATTTGTTTGATGAGGAAGATAATTTACCACTAATCAAACGTGGTGTGAAACGTAAACGAGGAAGACCAAAGAAAAAAGATGGGGACAATTTTGCCTGTACATTTTGTCATAAAGTATTACACACGAAAAAAGGGTTGCGTGTGCACTTAAGAGCCCATACAGGTGAAAAATTGAGATACTGCTTATTTTGTGATGCAAAATATACTCGTACTAACCATTTAATGCGACATATGGGCACACATGATAAACCTGGGTTGTCACATCCATGCGAACATTGTGATAAAACTTTCACTGCCGCAGCCGATTTATTCAAACATTCTAGAGAGCATGAGGAAATTGAAAGTAAAGATGACAATATTAAACAGGAGGAAGAAGAAATAAAGCCTGATGTAAACCCTGTAGAAGAGAGTGCGAAACCAAATGAAAACAACTTAGATGATGTTGAGCATATCGATGATGATAATGGTAATTTTGCTAATGATTTCCCATTTAGTGACGGTGATGATAATCGAGTAGATAGTGATGaagattttattacaaatatcaaGAAGGAGAAGAAAGACCCAAATAAGAAAGACTCTGATGAAAAAGATAAGGCTTTATATGAGTGTAAGGAGTGCACTAAAGTCATGACAACATATCTTGGATTAAAAATTCATATGAGGAGACATACTGGCGCCAATCTATCATTTTGTAAAttgtgtaATAAATCATTTACCAAACGGAGTCATTTGAATAGGCATATGCAAACGCATGGAATTATAGATGCAGAGAAACTAAAATCACTCAAACAAACTACAGATGCCAAAGGAAAAAGGGTTATGGAATGCGATTTTTGTGATCgcaaatttaaatatagaaaaagttTTGTTCATCACATGCAAGTGGAGCATGGCATGTCAGATACTGAGAGTGACTTTGGAAATCCTGAGAACGATCCAGTGGCTAAAGATAACTCAGAATTAGATAGCTCTAAACAGGTTACAGAAGAAGTAGAAgGAGCCACCAATGAAATTAACGAATCTCTAGAGCAAAAAGCCGAGATAAACAACGATGTTGGATTAGATCAGTGTGtaattgatgatgatgatggtatACCACACACAGTAAATGTGGTAGTGAAAAAAGTTAGAAGTAAAAACCAAATTTGCCACGTATGTGGTGCTAGTTTTGCAAGAGCTAATCATCTCACTAGACATATGACCCTGCATCGATCGGTTTTAGTGCATCAATGTGATCGATGTGAAAAAGCATTTGCCACTGATGACTACCTTAAAAAACATGTTGAGGAGGAACATATTAATAAACCATATGTTTGTACAGTGTGTAACAAACCGTTCAGTAGAGGTGAACATTTGATTAGGCACTTGAAAGTGCATCAACCCAATCCCGATAAGGAGGCAAATCTTAAATGTTCTATATGTGATTCTACCTTTACTAGgtctgaCCTTTTGGCACGTCACACCAAAGTTCATCTATTACAAGACAAACGCCACGTGTGCGTCGAGTGTGGCAAGGCGTTCAACAGGTTGGACAACCTGAAAACCCACCAGAGGATCCACACGGGCGTGAAGGACACATCCAAACTGCATCTGTGCATCTACTGTGGAAAAGAATTCAATAATTCCAGTAACATGATTGTACACATGCGTAGACATACCGGAGAGAGACCTTACAAGTGTAGCGAGTGCGGCAAAGGTTTTCCGAGGTCACATGATTTGAAGTGTCACGAGAGGACCCACTCTGGAGAAAAGCCTTATTTGTGTACTTTATGTGGAAAATCTTTCAACAAAAGTAATAAATTGCTTCGACACAGTCGAGTGCACACTGGTGAGCGCCCCTATGTTTGCAATATATGTGGCAGGGCTTTTACGCAGTCTAATGACTTGTCGCTCCACATGCGACGTCATACTGGTGCTCGTCCCTATGCCTGTGGTGTCTGCCCAGCTCGTTTCATTCAATCTGGACAGTTGAAGACCCACCGTAGGACAACTGGACACTGGATGGAGACACAGCCAGATCTCAAAGGGGGGCATAGAGTTGAACCTGTTACACCTGCCCATGAACCTATGCCTATTAGGTTTAAATCCCACGGAAAACCGAAGAAGGAGGAAATTGTGGAGGAAACTCCAATTTTAGAACCTCAAAATATACAGACAACTGTAGAGACCCAAAGTATAGAGGAAATCAACGTTGTACCAGAGGTTCACTCGATTCAAACCCAACCTCAAAGGATTTTGATGGGTATCATGGGGAATATTAAGATTCAAAATGATATGCAGCCACTTATTATTGATAGTACAAAGCTTGTGGAGTTGCATAATGCTGGATTAGTTAATTTACCGTCTGTCATACAGACTACTAATGGAGACGAGATTAAGTTAAAGTCTGAAGTGGCCAGTTTTAATATCGCCCAATGTGAGGAAAGCTTAGAGAAACAAGAAGCTGGTGCGAGCGGCACATTCCAAGATACCACCGTTGTATATTCTAGTGTAGGACACACTTCTACCACATACACAACTAGTGAAAACTATAACTTTCAAAATTACCACTAA
Protein Sequence: MITKEIELIIDKICRCCMCENENMHNVFENKKDADGSSSILLSEMLIACASVEVAFGDGLPYNLCDSCESKLNTAYEFRQQCQKTDSALRELANTESKDNITKQEDIIIQPDVHDNLFDEEDNLPLIKRGVKRKRGRPKKKDGDNFACTFCHKVLHTKKGLRVHLRAHTGEKLRYCLFCDAKYTRTNHLMRHMGTHDKPGLSHPCEHCDKTFTAAADLFKHSREHEEIESKDDNIKQEEEEIKPDVNPVEESAKPNENNLDDVEHIDDDNGNFANDFPFSDGDDNRVDSDEDFITNIKKEKKDPNKKDSDEKDKALYECKECTKVMTTYLGLKIHMRRHTGANLSFCKLCNKSFTKRSHLNRHMQTHGIIDAEKLKSLKQTTDAKGKRVMECDFCDRKFKYRKSFVHHMQVEHGMSDTESDFGNPENDPVAKDNSELDSSKQVTEEVEGATNEINESLEQKAEINNDVGLDQCVIDDDDGIPHTVNVVVKKVRSKNQICHVCGASFARANHLTRHMTLHRSVLVHQCDRCEKAFATDDYLKKHVEEEHINKPYVCTVCNKPFSRGEHLIRHLKVHQPNPDKEANLKCSICDSTFTRSDLLARHTKVHLLQDKRHVCVECGKAFNRLDNLKTHQRIHTGVKDTSKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCSECGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNICGRAFTQSNDLSLHMRRHTGARPYACGVCPARFIQSGQLKTHRRTTGHWMETQPDLKGGHRVEPVTPAHEPMPIRFKSHGKPKKEEIVEETPILEPQNIQTTVETQSIEEINVVPEVHSIQTQPQRILMGIMGNIKIQNDMQPLIIDSTKLVELHNAGLVNLPSVIQTTNGDEIKLKSEVASFNIAQCEESLEKQEAGASGTFQDTTVVYSSVGHTSTTYTTSENYNFQNYH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01227543;
90% Identity: -
80% Identity: -