Basic Information

Insect: Leptura quadrifasciata
Gene Symbol: -
Assembly: GCA_963675555.1
Location: OY776676.1:47859438-47864130[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4.8e-07 8.9e-05 24.8 1.5 1 23 217 239 217 239 0.98

2 12 2.7e-05 0.005 19.3 3.5 1 23 245 267 245 267 0.97

3 12 1.3e-07 2.4e-05 26.6 1.3 3 23 275 295 273 295 0.96

4 12 4.1e-06 0.00076 21.9 0.4 1 23 301 323 301 323 0.98

5 12 3.7e-06 0.00068 22.0 0.4 1 23 329 351 329 351 0.97

6 12 0.00038 0.071 15.7 1.1 1 23 357 379 357 379 0.96

7 12 1.7e-08 3.2e-06 29.4 0.7 1 23 385 407 385 407 0.97

8 12 3.2e-06 0.00059 22.3 0.1 1 23 413 435 413 435 0.98

9 12 4.3e-07 8e-05 25.0 2.2 1 23 441 463 441 463 0.99

10 12 1.4e-07 2.5e-05 26.5 0.2 1 23 469 491 469 491 0.99

11 12 1.5e-05 0.0027 20.2 2.3 1 23 497 519 497 519 0.97

12 12 7.2e-07 0.00013 24.3 0.5 1 23 525 547 525 547 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4.8e-07	8.9e-05	24.8	1.5	1	23	217	239	217	239	0.98
2	12	2.7e-05	0.005	19.3	3.5	1	23	245	267	245	267	0.97
3	12	1.3e-07	2.4e-05	26.6	1.3	3	23	275	295	273	295	0.96
4	12	4.1e-06	0.00076	21.9	0.4	1	23	301	323	301	323	0.98
5	12	3.7e-06	0.00068	22.0	0.4	1	23	329	351	329	351	0.97
6	12	0.00038	0.071	15.7	1.1	1	23	357	379	357	379	0.96
7	12	1.7e-08	3.2e-06	29.4	0.7	1	23	385	407	385	407	0.97
8	12	3.2e-06	0.00059	22.3	0.1	1	23	413	435	413	435	0.98
9	12	4.3e-07	8e-05	25.0	2.2	1	23	441	463	441	463	0.99
10	12	1.4e-07	2.5e-05	26.5	0.2	1	23	469	491	469	491	0.99
11	12	1.5e-05	0.0027	20.2	2.3	1	23	497	519	497	519	0.97
12	12	7.2e-07	0.00013	24.3	0.5	1	23	525	547	525	547	0.99

Sequence Information

Coding Sequence: ATGTCGTACGAAACAGTTCATATTGATAAAATTTGTAGAACTTGTTTGTCAGAAGAAAATAATATGAGATCGGTGTTTAGTATAGATGAGTCAGCTGGAGAAACTATGAGACTATTGGAAATGCTAATGTCCTGTGCCTCAGTGCAGATCATTGAAAATGATGGTCTGCCTAGTCAAGTATGCTTGCAATGTGTCCATTACATAACTAGAGCTTTTTCGTTTAAACAACTTTGTGAAAGGTCAGAAAATACTCTTCGAGCATTATTAGGTCGACCCCTACAAACTACATTTTTGGAATTGAAACCGCTGCTTGCTCATGATGTTCTAGTACCCAATACAGTTACCGAAATTATATCTACTGTAACAGAAACATTACCTTCTGTTGAAGAATCCTTAACAAGCGTTGTTATTCCAACCCATGAAAACAGTATATTTACTAATGAAATAGACATAAAAGAACCTCAAAGTGAGTTAGATATGAAATTTGAGACTTTTGATAGTGATGCAGGGTGTAAGTATTTAGTACAAAACGATACAGATAGTGATACTGGACAAGAAGTAAATTCAGAAGAAGTGGATATTAAACCTAAGAAGGAATCTAAAGAGCCTAAAAAGAAAGTTATCCAAGATGAAACTGAACAACCCATCTATCCCTGTGAAGATTGTACATTTTGTTTCACCACACAAGCTGATTTAAAGGCACATATAAAAACTCATTCAAAAGTATCCCGCCACATCTGTAAAACCTGCAATCAAGGTTTCGCCAGTGCCAGTACACTTTGTCGTCACATGAAAGTGCATGATGGTGCTAAAAGACATTTATGTAGTGAATGCGGTAAAGGATTTGCTAGATCAGACGACTTGACACGCCACTTGCGAACACATACTGGTGAAAAACCATTTCCATGTAAGCTGTGTGGAAAATCTTTTGCCCAGTCTTTTAGGCTTTTGGAACACATGAGGGCACATGCTAACGAAAAAAGTTTTATTTGCTCAGTGTGCGGAAAAGCATTCTCAAGATATACCAGTTTAGCTGCACACAACAAGACCCACAGTGGGATTAAGAGCCATGCGTGTGGTGTTTGTGGTAAAAGGTTATGTGGGTCAGGATCATTGGCAATGCACATGAAAACCCATACAGGTCTTAAAGATCACATTTGTCCTTATTGTGGAAAAGGTTTTACTACCCCAAGTAACCTTATTATCCACAAGAGAACTCATACAGGTGAACGTCCTTACGTTTGCAATGTTTGTGGCAAAGGGTTTCCAGATCCTTCGAGATTAACAGTACATTCAAGGTCACATAGTGGAGAAAAACCGTATGTATGCAAAACATGTGGTCGTGGTTGCGTTAGTTCGTCCCAGTTGAAAAAACACATGCGTATTCATACAGGAGAAAAGCCATATCAATGTACACTATGCCCTAAAGCTTTCCCAAGGAGCGAGGATTTGAGAATTCACATTAAGACACACACTGGAGACCGTAatcatgtttgtacattttgcAAAAAAGGTTTCTATCAAGCATCCACGTTAAAAGTCCATTTAAGGATTCATACAGGGGAAAAACCATACACATGTAACATTTGTGACAAGGCTTTTTCTCAAACAGGCCCCCTTTCAACTCATATGAAGACCCACTGA
Protein Sequence: MSYETVHIDKICRTCLSEENNMRSVFSIDESAGETMRLLEMLMSCASVQIIENDGLPSQVCLQCVHYITRAFSFKQLCERSENTLRALLGRPLQTTFLELKPLLAHDVLVPNTVTEIISTVTETLPSVEESLTSVVIPTHENSIFTNEIDIKEPQSELDMKFETFDSDAGCKYLVQNDTDSDTGQEVNSEEVDIKPKKESKEPKKKVIQDETEQPIYPCEDCTFCFTTQADLKAHIKTHSKVSRHICKTCNQGFASASTLCRHMKVHDGAKRHLCSECGKGFARSDDLTRHLRTHTGEKPFPCKLCGKSFAQSFRLLEHMRAHANEKSFICSVCGKAFSRYTSLAAHNKTHSGIKSHACGVCGKRLCGSGSLAMHMKTHTGLKDHICPYCGKGFTTPSNLIIHKRTHTGERPYVCNVCGKGFPDPSRLTVHSRSHSGEKPYVCKTCGRGCVSSSQLKKHMRIHTGEKPYQCTLCPKAFPRSEDLRIHIKTHTGDRNHVCTFCKKGFYQASTLKVHLRIHTGEKPYTCNICDKAFSQTGPLSTHMKTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01370058; iTF_00166254; iTF_01290581; iTF_01310751; iTF_01227542; iTF_01014836; iTF_00110760; iTF_01227545; iTF_00722298; iTF_01296703;
90% Identity: iTF_01370058;
80% Identity: -