Basic Information

Insect: Aromia moschata
Gene Symbol: -
Assembly: GCA_029963805.1
Location: JAPWTK010000007.1:3917871-3920827[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 7.4e-06 0.00056 21.0 2.1 1 23 205 227 205 227 0.98

2 12 4.8e-05 0.0036 18.4 3.3 1 23 233 255 233 255 0.97

3 12 1.2e-07 9e-06 26.6 1.3 3 23 263 283 261 283 0.96

4 12 4.1e-06 0.00032 21.8 0.8 1 23 289 311 289 311 0.98

5 12 1.9e-06 0.00014 22.9 0.4 1 23 317 339 317 339 0.98

6 12 0.00017 0.013 16.7 1.1 1 23 345 367 345 367 0.98

7 12 1.5e-08 1.2e-06 29.4 0.7 1 23 373 395 373 395 0.97

8 12 2.8e-06 0.00022 22.3 0.1 1 23 401 423 401 423 0.98

9 12 4.6e-07 3.5e-05 24.8 1.8 1 23 429 451 429 451 0.98

10 12 8.2e-08 6.3e-06 27.1 0.2 1 23 457 479 457 479 0.99

11 12 3.7e-06 0.00028 21.9 2.5 1 23 485 507 485 507 0.97

12 12 6.5e-07 5e-05 24.3 0.5 1 23 513 535 513 535 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	7.4e-06	0.00056	21.0	2.1	1	23	205	227	205	227	0.98
2	12	4.8e-05	0.0036	18.4	3.3	1	23	233	255	233	255	0.97
3	12	1.2e-07	9e-06	26.6	1.3	3	23	263	283	261	283	0.96
4	12	4.1e-06	0.00032	21.8	0.8	1	23	289	311	289	311	0.98
5	12	1.9e-06	0.00014	22.9	0.4	1	23	317	339	317	339	0.98
6	12	0.00017	0.013	16.7	1.1	1	23	345	367	345	367	0.98
7	12	1.5e-08	1.2e-06	29.4	0.7	1	23	373	395	373	395	0.97
8	12	2.8e-06	0.00022	22.3	0.1	1	23	401	423	401	423	0.98
9	12	4.6e-07	3.5e-05	24.8	1.8	1	23	429	451	429	451	0.98
10	12	8.2e-08	6.3e-06	27.1	0.2	1	23	457	479	457	479	0.99
11	12	3.7e-06	0.00028	21.9	2.5	1	23	485	507	485	507	0.97
12	12	6.5e-07	5e-05	24.3	0.5	1	23	513	535	513	535	0.99

Sequence Information

Coding Sequence: atgtcgTACGAGACGAtccacataaataaaatatgtaggacGTGCCTTTCGGAAGACAGTAACATGAGGTCGGTGTTCAGCATGGACGAGTCGCTCGGCGAGACGATTCGCCTCGTCGAGATGCTCATGTCCTGTGCCTCAGTGCAGGTCATGGAGAACGACGGCTTACCTGGTCAGGTGTGCTTGCAGTGCGTACACTACATCACGAGGGCGTACTCCTTCAAACAGTTGTGCGAGAGGTCAGAGAACACTCTACGCGAGTTGTTGGGTAGGCCCCTGCAGACTACGTTCCTCGAACTGAAGCCGTTGCTCGCGAACGACGTACTAGTGCCAAACACAGTCTCTGAGATTATATCGAGCGTTACTTCCGTGATACCACCGGTTTCAGACGCAATAACTACAATTACAGTACCGACCCATAATATTTTAGAAGCGGTTACTAACGATTTAGACATAAAAGAGCCCCAGAACGATTTGGACTTGAAATTTGAGAGCTACGAAAACGACATGGCTTGTAAGTATAAGTTTATAATTGAAAGGTTACGAACATCGACGTTGGGCAAAAAAAAGGATTCCAAGAAGAAAGTCGTCGACGAGACGGAACAGCCTATATACCCCTGCGAGGAGTGCACTTTTTGTTTCACCACGCAGGCCGATCTCAAGATGCACGTTAAGACCCACCGGAAGGTGACCCGCCACGTGTGCAGGACGTGCAACCAGGGCTTCGCCAGCGCCAGCACGCTGTGCCGCCACATGAAGGTCCACGACGGCGCCAAGCGGCACCTGTGCAGTGAATGCGGCAAGGGCTTCGCGAGGTCCGACGACCTCACGCGCCACCTCAGGACTCACACCGGGGAAAAGCCGTTCTCGTGTAAGCTGTGCGGGAAGTCCTTTGCGCAGTCCTTCAGGCTGCTGGAGCACATGAGGGCGCACGCCAACGAGAAGAGCTTCGTCTGTTCGGTGTGCGGGAAGGCCTTCTCGAGGTACACCAGCCTGGCGGCTCACAACAAGACGCACAGCGGCGTCAAGAGCCACGTGTGTGGCGTGTGCGGCAAGAGGTTGTGCGGATCTGGCTCGCTGGCGATGCACATGAAGACGCACACTGGCCTGAAGGACCACATCTGCCCGTACTGCGGAAAGGGCTTCACCACCCCCAGCAACCTCATCATACACAAGAGAACGCATACTGGCGAACGCCCTTACGTGTGCAACGTGTGCGGCAAGGGTTTCCCCGACCCTTCGAGGCTGACGGTGCACTCGAGATCGCACAGCGGCGAGAAACCCTACATCTGCAACCAGTGCGGACGCGGATGCGTCAGCTCCTCCCAGCTGAAGAAGCACATGCGCATCCACACGGGAGAGAAGCCCTACCAGTGCACCATGTGCCCCAAGGCCTTCCCCAGGAGCGAGGACCTCAGGATACACATCAAAACGCACACAGGCGACAGGAACCACGTGTGTACCTTCTGTAAAAAGGGTTTCTACCAGGCCTCCACGCTGAAAGTCCACATGCGGATACACACAGGAGAGAAGCCTTACACCTGCAACATATGCGACAAGGCGTTCTCGCAAACGGGGCCCCTCTCCACGCACATGAAGACCCACTGA
Protein Sequence: MSYETIHINKICRTCLSEDSNMRSVFSMDESLGETIRLVEMLMSCASVQVMENDGLPGQVCLQCVHYITRAYSFKQLCERSENTLRELLGRPLQTTFLELKPLLANDVLVPNTVSEIISSVTSVIPPVSDAITTITVPTHNILEAVTNDLDIKEPQNDLDLKFESYENDMACKYKFIIERLRTSTLGKKKDSKKKVVDETEQPIYPCEECTFCFTTQADLKMHVKTHRKVTRHVCRTCNQGFASASTLCRHMKVHDGAKRHLCSECGKGFARSDDLTRHLRTHTGEKPFSCKLCGKSFAQSFRLLEHMRAHANEKSFVCSVCGKAFSRYTSLAAHNKTHSGVKSHVCGVCGKRLCGSGSLAMHMKTHTGLKDHICPYCGKGFTTPSNLIIHKRTHTGERPYVCNVCGKGFPDPSRLTVHSRSHSGEKPYICNQCGRGCVSSSQLKKHMRIHTGEKPYQCTMCPKAFPRSEDLRIHIKTHTGDRNHVCTFCKKGFYQASTLKVHMRIHTGEKPYTCNICDKAFSQTGPLSTHMKTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00886683;
90% Identity: -
80% Identity: -