Lace043563.1
Basic Information
- Insect
- Leptothorax acervorum
- Gene Symbol
- -
- Assembly
- GCA_035220615.1
- Location
- JASTWQ010001264.1:913916-927459[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.011 2 10.4 5.6 2 23 87 109 86 109 0.90 2 21 7.2e-06 0.0013 20.5 0.8 2 23 115 137 114 137 0.96 3 21 0.33 58 5.8 2.9 2 23 198 220 197 220 0.89 4 21 1.8e-05 0.0032 19.2 0.6 2 23 226 248 225 248 0.96 5 21 0.33 58 5.8 2.9 2 23 309 331 308 331 0.89 6 21 1.8e-05 0.0032 19.2 0.6 2 23 337 359 336 359 0.96 7 21 0.33 58 5.8 2.9 2 23 420 442 419 442 0.89 8 21 1.8e-05 0.0032 19.2 0.6 2 23 448 470 447 470 0.96 9 21 0.33 58 5.8 2.9 2 23 531 553 530 553 0.89 10 21 1.8e-05 0.0032 19.2 0.6 2 23 559 581 558 581 0.96 11 21 0.33 58 5.8 2.9 2 23 642 664 641 664 0.89 12 21 1.8e-05 0.0032 19.2 0.6 2 23 670 692 669 692 0.96 13 21 0.33 58 5.8 2.9 2 23 753 775 752 775 0.89 14 21 1.8e-05 0.0032 19.2 0.6 2 23 781 803 780 803 0.96 15 21 0.33 58 5.8 2.9 2 23 864 886 863 886 0.89 16 21 5.9e-05 0.01 17.6 2.1 2 23 892 914 891 914 0.96 17 21 0.0032 0.57 12.1 3.8 2 23 975 997 974 997 0.92 18 21 0.011 2 10.4 5.6 2 23 1063 1085 1062 1085 0.90 19 21 0.0019 0.33 12.9 0.4 2 23 1091 1113 1090 1113 0.96 20 21 0.095 17 7.5 5.0 2 23 1174 1196 1173 1196 0.92 21 21 0.00026 0.046 15.6 0.6 2 23 1202 1224 1201 1224 0.96
Sequence Information
- Coding Sequence
- ATGTCGTCGCCGAGACATCGCGATCCGGCTCGTAATCGCCGATCACGGTCGCGGTCCGTATCCCTTGACCAAGCGGACGGaaattttccGGACTGTGATGAGGATTCCGAAGATCGGAGCAACAGATCTCCAGATCTAAGGGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGAGAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAACcacgagagaaaaatataaagTGTACACATTGTGATACAAGATTCACAACAATGGGCCATATGAGGAGACACGCTGCGCATAAGCACGAGAATAAATATGTAACGTGCGACATTTGCCGAAAGCAATTTACACGAAAGGACGAACTATTACAACATATGAAGAACATCCACAATTATGATACACATTGTGATGAGGATTCCGAAGATCGGAGCAACAGATCTCCAAATCTAAGGGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGATAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAGCcacgagagaaaaatataaagTGTATACATTGTGATAGTAGATTCACAACAAAAGGCGCTATGACGAGACACGTTGCGCATAAGCacaagaataaaaatgtaacgtGCAACATTTGCCGAAAGCAATTTGCACGAAAGGACGCACTATCACAACATATGAAGAACATCCACAATTATGATACACATTGTGATGAGGATTCCAAAGATCGGAGCAACAGATCTCCAAATCTAAGGGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGATAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAGCcacgagagaaaaatataaagTGTATACATTGTGATAGTAGATTCACAACAAAAGGCGCTATGACGAGACACGTTGCGCATAAGCacaagaataaaaatgtaacgtGCAACATTTGCCGAAAGCAATTTGCACGAAAGGACGCACTATCACAACATATGAAGAACATCCACAATTATGATACACATTGTGATGAGGATTCCAAAGATCGGAGCAACAGATCTCCAAATCTAAGGGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGATAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAGCcacgagagaaaaatataaagTGTATACATTGTGATAGTAGATTCACAACAAAAGGCGCTATGACGAGACACGTTGCGCATAAGCacaagaataaaaatgtaacgtGCAACATTTGCCGAAAGCAATTTGCACGAAAGGACGCACTATCACAACATATGAAGAACATCCACAATTATGATACACATTGTGATGAGGATTCCAAAGATCGGAGCAACAGATCTCCAAATCTAAGGGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGATAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAGCcacgagagaaaaatataaagTGTATACATTGTGATAGTAGATTCACAACAAAAGGCGCTATGACGAGACACGTTGCGCATAAGCacaagaataaaaatgtaacgtGCAACATTTGCCGAAAGCAATTTGCACGAAAGGACGCACTATCACAACATATGAAGAACATCCACAATTATGATACACATTGTGATGAGGATTCCAAAGATCGGAGCAACAGATCTCCAAATCTAAGGGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGATAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAGCcacgagagaaaaatataaagTGTATACATTGTGATAGTAGATTCACAACAAAAGGCGCTATGACGAGACACGTTGCGCATAAGCacaagaataaaaatgtaacgtGCAACATTTGCCGAAAGCAATTTGCACGAAAGGACGCACTATCACAACATATGAAGAACATCCACAATTATGATACACATTGTGATGAGGATTCCAAAGATCGGAGCAACAGATCTCCAAATCTAAGGGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGATAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAGCcacgagagaaaaatataaagTGTATACATTGTGATAGTAGATTCACAACAAAAGGCGCTATGACGAGACACGTTGCGCATAAGCacaagaataaaaatgtaacgtGCAACATTTGCCGAAAGCAATTTGCACGAAAGGACGCACTATCACAACATATGAAGAACATCCACAATTATGATACACATTGTGATGAGGATTCCAAAGATCGGAGCAACAGATCTCCAAATCTAAGGGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGATAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAGCcacgagagaaaaatataaagTGTATACATTGTGATAGTAGATTCACAACAAAAGGCGCTATGACGAGACACGTTGCGCATAAGCacaagaataaaaatgtaacgtGCAACATTTGCCGAAAGCAATTTGCACGAAAGCACGCACTATCACAACATATGAAGAACATCCACAATTATGATACACATTGTGATGAGGATTCCGAAGATCGGAGCAACAGATCTCCAGATCTAAGGGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGAGAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAACcacgagagaaaaatataaagTGTACACATTGTGATACAAGATTCACAAGAATGGGCGATATGAGGAGACACGTTGCGCATAAGCACGAGAATAAATATGTAACaaattttccGGACTGTGATGAGGATTCCGAAGATCGGAGCAACAGATCTCCAGATCTAAGGGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGAGAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAGCcacgagagaaaaatataaagTGTACACATTGTGATACAAGATTCACAACAATGGGCCATATGAGGAGACACGCTGCGCATAAGCACGAGAATAAATATGTAACGTGCGACATTTGCCGAATGCAATTTATACGAAAGGACGTACTATCACAACATATGAAGAACATCCACAATTATGATACACATTGTGATGAGGATTCCGAAGATCGGAGCAACAGATCTCCAGATCTAAGAGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGAGAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAACcacgagagaaaaatataaagTGTACACATTGTGATACAAGATTCACAGCAATGGGCCATATGAGGAGACACGTTGCGCATAAGCACGAGAATAAATATGTAACGTGCGACATTTGCCGAAAGCAATTTATACGAAAGGACGTACTATCACAACATATGAAGAACATCCACAATTATGATACACATTGTGATGAGGATTCCGAAGATCGGAGCAACAGATCTCCAGATCTAAGAGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGAGAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAACcacgagagaaaaatataaaggtaATACGTACtacaaaataa
- Protein Sequence
- MSSPRHRDPARNRRSRSRSVSLDQADGNFPDCDEDSEDRSNRSPDLREHLTRRKEKQNMEKRNRDVQEPRPGPSSAPEIQPREKNIKCTHCDTRFTTMGHMRRHAAHKHENKYVTCDICRKQFTRKDELLQHMKNIHNYDTHCDEDSEDRSNRSPNLREHLTRRKEKQNMDKRNRDVQEPRPGPSSAPEIQPREKNIKCIHCDSRFTTKGAMTRHVAHKHKNKNVTCNICRKQFARKDALSQHMKNIHNYDTHCDEDSKDRSNRSPNLREHLTRRKEKQNMDKRNRDVQEPRPGPSSAPEIQPREKNIKCIHCDSRFTTKGAMTRHVAHKHKNKNVTCNICRKQFARKDALSQHMKNIHNYDTHCDEDSKDRSNRSPNLREHLTRRKEKQNMDKRNRDVQEPRPGPSSAPEIQPREKNIKCIHCDSRFTTKGAMTRHVAHKHKNKNVTCNICRKQFARKDALSQHMKNIHNYDTHCDEDSKDRSNRSPNLREHLTRRKEKQNMDKRNRDVQEPRPGPSSAPEIQPREKNIKCIHCDSRFTTKGAMTRHVAHKHKNKNVTCNICRKQFARKDALSQHMKNIHNYDTHCDEDSKDRSNRSPNLREHLTRRKEKQNMDKRNRDVQEPRPGPSSAPEIQPREKNIKCIHCDSRFTTKGAMTRHVAHKHKNKNVTCNICRKQFARKDALSQHMKNIHNYDTHCDEDSKDRSNRSPNLREHLTRRKEKQNMDKRNRDVQEPRPGPSSAPEIQPREKNIKCIHCDSRFTTKGAMTRHVAHKHKNKNVTCNICRKQFARKDALSQHMKNIHNYDTHCDEDSKDRSNRSPNLREHLTRRKEKQNMDKRNRDVQEPRPGPSSAPEIQPREKNIKCIHCDSRFTTKGAMTRHVAHKHKNKNVTCNICRKQFARKHALSQHMKNIHNYDTHCDEDSEDRSNRSPDLREHLTRRKEKQNMEKRNRDVQEPRPGPSSAPEIQPREKNIKCTHCDTRFTRMGDMRRHVAHKHENKYVTNFPDCDEDSEDRSNRSPDLREHLTRRKEKQNMEKRNRDVQEPRPGPSSAPEIQPREKNIKCTHCDTRFTTMGHMRRHAAHKHENKYVTCDICRMQFIRKDVLSQHMKNIHNYDTHCDEDSEDRSNRSPDLREHLTRRKEKQNMEKRNRDVQEPRPGPSSAPEIQPREKNIKCTHCDTRFTAMGHMRRHVAHKHENKYVTCDICRKQFIRKDVLSQHMKNIHNYDTHCDEDSEDRSNRSPDLREHLTRRKEKQNMEKRNRDVQEPRPGPSSAPEIQPREKNIKVIRTTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00885302;
- 90% Identity
- iTF_00885302;
- 80% Identity
- iTF_00885302;