Lace043563.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptothorax acervorum
Gene Symbol
-
Assembly
GCA_035220615.1
Location
JASTWQ010001264.1:913916-927459[+]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 0.42 1.1e+03 1.1 4.5 12 43 81 109 76 110 0.75
2 27 0.064 1.7e+02 3.7 10.1 9 43 108 137 100 165 0.78
3 27 0.0041 11 7.5 4.1 12 44 192 221 187 221 0.87
4 27 5.8e-05 0.16 13.4 5.3 11 43 219 248 217 249 0.86
5 27 0.28 7.6e+02 1.6 0.2 28 42 260 275 252 276 0.73
6 27 0.0041 11 7.5 4.1 12 44 303 332 298 332 0.87
7 27 5.8e-05 0.16 13.4 5.3 11 43 330 359 328 360 0.86
8 27 0.28 7.6e+02 1.6 0.2 28 42 371 386 363 387 0.73
9 27 0.0041 11 7.5 4.1 12 44 414 443 409 443 0.87
10 27 5.8e-05 0.16 13.4 5.3 11 43 441 470 439 471 0.86
11 27 0.28 7.6e+02 1.6 0.2 28 42 482 497 474 498 0.73
12 27 0.0041 11 7.5 4.1 12 44 525 554 520 554 0.87
13 27 5.8e-05 0.16 13.4 5.3 11 43 552 581 550 582 0.86
14 27 0.28 7.6e+02 1.6 0.2 28 42 593 608 585 609 0.73
15 27 0.0041 11 7.5 4.1 12 44 636 665 631 665 0.87
16 27 5.8e-05 0.16 13.4 5.3 11 43 663 692 661 693 0.86
17 27 0.28 7.6e+02 1.6 0.2 28 42 704 719 696 720 0.73
18 27 0.0041 11 7.5 4.1 12 44 747 776 742 776 0.87
19 27 5.8e-05 0.16 13.4 5.3 11 43 774 803 772 804 0.86
20 27 0.28 7.6e+02 1.6 0.2 28 42 815 830 807 831 0.73
21 27 0.0043 12 7.4 4.2 12 44 858 887 853 887 0.87
22 27 0.00014 0.39 12.2 8.5 11 43 885 914 883 915 0.87
23 27 0.00073 2 9.9 1.0 12 43 969 997 964 998 0.88
24 27 0.49 1.3e+03 0.9 4.7 12 43 1057 1085 1052 1086 0.75
25 27 0.31 8.6e+02 1.5 4.7 9 43 1084 1113 1076 1114 0.82
26 27 0.09 2.5e+02 3.2 5.8 12 43 1168 1196 1163 1197 0.87
27 27 0.01 29 6.2 3.4 10 43 1196 1224 1194 1225 0.83

Sequence Information

Coding Sequence
ATGTCGTCGCCGAGACATCGCGATCCGGCTCGTAATCGCCGATCACGGTCGCGGTCCGTATCCCTTGACCAAGCGGACGGaaattttccGGACTGTGATGAGGATTCCGAAGATCGGAGCAACAGATCTCCAGATCTAAGGGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGAGAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAACcacgagagaaaaatataaagTGTACACATTGTGATACAAGATTCACAACAATGGGCCATATGAGGAGACACGCTGCGCATAAGCACGAGAATAAATATGTAACGTGCGACATTTGCCGAAAGCAATTTACACGAAAGGACGAACTATTACAACATATGAAGAACATCCACAATTATGATACACATTGTGATGAGGATTCCGAAGATCGGAGCAACAGATCTCCAAATCTAAGGGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGATAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAGCcacgagagaaaaatataaagTGTATACATTGTGATAGTAGATTCACAACAAAAGGCGCTATGACGAGACACGTTGCGCATAAGCacaagaataaaaatgtaacgtGCAACATTTGCCGAAAGCAATTTGCACGAAAGGACGCACTATCACAACATATGAAGAACATCCACAATTATGATACACATTGTGATGAGGATTCCAAAGATCGGAGCAACAGATCTCCAAATCTAAGGGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGATAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAGCcacgagagaaaaatataaagTGTATACATTGTGATAGTAGATTCACAACAAAAGGCGCTATGACGAGACACGTTGCGCATAAGCacaagaataaaaatgtaacgtGCAACATTTGCCGAAAGCAATTTGCACGAAAGGACGCACTATCACAACATATGAAGAACATCCACAATTATGATACACATTGTGATGAGGATTCCAAAGATCGGAGCAACAGATCTCCAAATCTAAGGGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGATAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAGCcacgagagaaaaatataaagTGTATACATTGTGATAGTAGATTCACAACAAAAGGCGCTATGACGAGACACGTTGCGCATAAGCacaagaataaaaatgtaacgtGCAACATTTGCCGAAAGCAATTTGCACGAAAGGACGCACTATCACAACATATGAAGAACATCCACAATTATGATACACATTGTGATGAGGATTCCAAAGATCGGAGCAACAGATCTCCAAATCTAAGGGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGATAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAGCcacgagagaaaaatataaagTGTATACATTGTGATAGTAGATTCACAACAAAAGGCGCTATGACGAGACACGTTGCGCATAAGCacaagaataaaaatgtaacgtGCAACATTTGCCGAAAGCAATTTGCACGAAAGGACGCACTATCACAACATATGAAGAACATCCACAATTATGATACACATTGTGATGAGGATTCCAAAGATCGGAGCAACAGATCTCCAAATCTAAGGGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGATAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAGCcacgagagaaaaatataaagTGTATACATTGTGATAGTAGATTCACAACAAAAGGCGCTATGACGAGACACGTTGCGCATAAGCacaagaataaaaatgtaacgtGCAACATTTGCCGAAAGCAATTTGCACGAAAGGACGCACTATCACAACATATGAAGAACATCCACAATTATGATACACATTGTGATGAGGATTCCAAAGATCGGAGCAACAGATCTCCAAATCTAAGGGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGATAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAGCcacgagagaaaaatataaagTGTATACATTGTGATAGTAGATTCACAACAAAAGGCGCTATGACGAGACACGTTGCGCATAAGCacaagaataaaaatgtaacgtGCAACATTTGCCGAAAGCAATTTGCACGAAAGGACGCACTATCACAACATATGAAGAACATCCACAATTATGATACACATTGTGATGAGGATTCCAAAGATCGGAGCAACAGATCTCCAAATCTAAGGGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGATAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAGCcacgagagaaaaatataaagTGTATACATTGTGATAGTAGATTCACAACAAAAGGCGCTATGACGAGACACGTTGCGCATAAGCacaagaataaaaatgtaacgtGCAACATTTGCCGAAAGCAATTTGCACGAAAGCACGCACTATCACAACATATGAAGAACATCCACAATTATGATACACATTGTGATGAGGATTCCGAAGATCGGAGCAACAGATCTCCAGATCTAAGGGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGAGAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAACcacgagagaaaaatataaagTGTACACATTGTGATACAAGATTCACAAGAATGGGCGATATGAGGAGACACGTTGCGCATAAGCACGAGAATAAATATGTAACaaattttccGGACTGTGATGAGGATTCCGAAGATCGGAGCAACAGATCTCCAGATCTAAGGGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGAGAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAGCcacgagagaaaaatataaagTGTACACATTGTGATACAAGATTCACAACAATGGGCCATATGAGGAGACACGCTGCGCATAAGCACGAGAATAAATATGTAACGTGCGACATTTGCCGAATGCAATTTATACGAAAGGACGTACTATCACAACATATGAAGAACATCCACAATTATGATACACATTGTGATGAGGATTCCGAAGATCGGAGCAACAGATCTCCAGATCTAAGAGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGAGAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAACcacgagagaaaaatataaagTGTACACATTGTGATACAAGATTCACAGCAATGGGCCATATGAGGAGACACGTTGCGCATAAGCACGAGAATAAATATGTAACGTGCGACATTTGCCGAAAGCAATTTATACGAAAGGACGTACTATCACAACATATGAAGAACATCCACAATTATGATACACATTGTGATGAGGATTCCGAAGATCGGAGCAACAGATCTCCAGATCTAAGAGAGCATTTAACGAGAAGGAAGGAGAAACAAAATATGGAGAAAAGGAATAGAGATGTCCAAGAGCCGAGACCGGGGCCGTCCTCGGCCCCAGAGATCCAACcacgagagaaaaatataaaggtaATACGTACtacaaaataa
Protein Sequence
MSSPRHRDPARNRRSRSRSVSLDQADGNFPDCDEDSEDRSNRSPDLREHLTRRKEKQNMEKRNRDVQEPRPGPSSAPEIQPREKNIKCTHCDTRFTTMGHMRRHAAHKHENKYVTCDICRKQFTRKDELLQHMKNIHNYDTHCDEDSEDRSNRSPNLREHLTRRKEKQNMDKRNRDVQEPRPGPSSAPEIQPREKNIKCIHCDSRFTTKGAMTRHVAHKHKNKNVTCNICRKQFARKDALSQHMKNIHNYDTHCDEDSKDRSNRSPNLREHLTRRKEKQNMDKRNRDVQEPRPGPSSAPEIQPREKNIKCIHCDSRFTTKGAMTRHVAHKHKNKNVTCNICRKQFARKDALSQHMKNIHNYDTHCDEDSKDRSNRSPNLREHLTRRKEKQNMDKRNRDVQEPRPGPSSAPEIQPREKNIKCIHCDSRFTTKGAMTRHVAHKHKNKNVTCNICRKQFARKDALSQHMKNIHNYDTHCDEDSKDRSNRSPNLREHLTRRKEKQNMDKRNRDVQEPRPGPSSAPEIQPREKNIKCIHCDSRFTTKGAMTRHVAHKHKNKNVTCNICRKQFARKDALSQHMKNIHNYDTHCDEDSKDRSNRSPNLREHLTRRKEKQNMDKRNRDVQEPRPGPSSAPEIQPREKNIKCIHCDSRFTTKGAMTRHVAHKHKNKNVTCNICRKQFARKDALSQHMKNIHNYDTHCDEDSKDRSNRSPNLREHLTRRKEKQNMDKRNRDVQEPRPGPSSAPEIQPREKNIKCIHCDSRFTTKGAMTRHVAHKHKNKNVTCNICRKQFARKDALSQHMKNIHNYDTHCDEDSKDRSNRSPNLREHLTRRKEKQNMDKRNRDVQEPRPGPSSAPEIQPREKNIKCIHCDSRFTTKGAMTRHVAHKHKNKNVTCNICRKQFARKHALSQHMKNIHNYDTHCDEDSEDRSNRSPDLREHLTRRKEKQNMEKRNRDVQEPRPGPSSAPEIQPREKNIKCTHCDTRFTRMGDMRRHVAHKHENKYVTNFPDCDEDSEDRSNRSPDLREHLTRRKEKQNMEKRNRDVQEPRPGPSSAPEIQPREKNIKCTHCDTRFTTMGHMRRHAAHKHENKYVTCDICRMQFIRKDVLSQHMKNIHNYDTHCDEDSEDRSNRSPDLREHLTRRKEKQNMEKRNRDVQEPRPGPSSAPEIQPREKNIKCTHCDTRFTAMGHMRRHVAHKHENKYVTCDICRKQFIRKDVLSQHMKNIHNYDTHCDEDSEDRSNRSPDLREHLTRRKEKQNMEKRNRDVQEPRPGPSSAPEIQPREKNIKVIRTTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00885345;
90% Identity
iTF_00885345;
80% Identity
iTF_00885345;