Basic Information

Insect: Leptothorax acervorum
Gene Symbol: -
Assembly: GCA_035220615.1
Location: JASTWQ010000022.1:504608-510548[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.2 2.2e+02 4.0 9.7 2 23 294 316 293 316 0.97

2 18 0.047 8.3 8.5 2.2 1 23 364 386 364 386 0.97

3 18 1 1.8e+02 4.3 0.3 1 23 435 457 435 457 0.97

4 18 0.045 8 8.5 0.2 1 21 505 525 505 526 0.92

5 18 0.0016 0.28 13.1 0.2 2 23 567 588 566 588 0.97

6 18 0.00067 0.12 14.3 0.3 1 23 635 657 635 657 0.96

7 18 0.0004 0.07 15.0 0.1 1 23 663 685 663 685 0.98

8 18 2.4e-05 0.0043 18.8 0.2 1 23 729 752 729 752 0.96

9 18 0.00057 0.1 14.5 0.5 1 23 758 781 758 781 0.96

10 18 6.5e-06 0.0011 20.6 1.0 2 23 789 811 788 811 0.97

11 18 0.00018 0.033 16.0 0.0 1 23 819 841 819 841 0.93

12 18 0.093 17 7.5 0.3 1 20 901 920 901 920 0.97

13 18 0.0022 0.39 12.7 0.1 2 23 940 961 939 961 0.96

14 18 1.2e-05 0.0022 19.8 0.7 1 23 974 996 974 996 0.97

15 18 0.00029 0.052 15.4 3.0 1 23 1018 1041 1018 1041 0.93

16 18 0.0025 0.45 12.5 1.3 2 23 1102 1124 1101 1124 0.95

17 18 0.00076 0.13 14.1 1.0 1 23 1144 1167 1144 1167 0.93

18 18 0.0062 1.1 11.2 0.3 2 23 1261 1283 1261 1283 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.2	2.2e+02	4.0	9.7	2	23	294	316	293	316	0.97
2	18	0.047	8.3	8.5	2.2	1	23	364	386	364	386	0.97
3	18	1	1.8e+02	4.3	0.3	1	23	435	457	435	457	0.97
4	18	0.045	8	8.5	0.2	1	21	505	525	505	526	0.92
5	18	0.0016	0.28	13.1	0.2	2	23	567	588	566	588	0.97
6	18	0.00067	0.12	14.3	0.3	1	23	635	657	635	657	0.96
7	18	0.0004	0.07	15.0	0.1	1	23	663	685	663	685	0.98
8	18	2.4e-05	0.0043	18.8	0.2	1	23	729	752	729	752	0.96
9	18	0.00057	0.1	14.5	0.5	1	23	758	781	758	781	0.96
10	18	6.5e-06	0.0011	20.6	1.0	2	23	789	811	788	811	0.97
11	18	0.00018	0.033	16.0	0.0	1	23	819	841	819	841	0.93
12	18	0.093	17	7.5	0.3	1	20	901	920	901	920	0.97
13	18	0.0022	0.39	12.7	0.1	2	23	940	961	939	961	0.96
14	18	1.2e-05	0.0022	19.8	0.7	1	23	974	996	974	996	0.97
15	18	0.00029	0.052	15.4	3.0	1	23	1018	1041	1018	1041	0.93
16	18	0.0025	0.45	12.5	1.3	2	23	1102	1124	1101	1124	0.95
17	18	0.00076	0.13	14.1	1.0	1	23	1144	1167	1144	1167	0.93
18	18	0.0062	1.1	11.2	0.3	2	23	1261	1283	1261	1283	0.94

Sequence Information

Coding Sequence: ATGGACGAGGACGTGGTGGAGATGTTGGAGACGGTGGAGGCCAGGAACGTTGAGAACGTCTGCAGACTGTGCCTTTCCGCGGACGGGCCTAGATCCTCGGTGTTCGAGACGCGGGAGGATGAGGAGAAGGACTCGTCCGGCGTGCCGCTGGCCGCCAAGATTCAGGCCTGTCTGTCGATCCAGattacagCAACCGATAGGTTGTCCACGCTGATATGCGAAAATTGCGTGAAGAGCGTTAATCAATGGCACATCTACAAGGAGTCGTGTCTGCGTTCCCAGGACAAGCTGCAAGAATGGCTGGCAAATCAAATGCAATCAAATCCTAAgGTTGTCACGATCAAGGATGAACCAATGGATCTTGACGAAGATAATGTAGAAATTATCTCAGAGACGACCAATAATTTGGAGCAACCACATTCACCAATTCGAACAGTGGAAAAGGATGGACGTAATAGTGAGAAAGGTCAAGATGTAACAGATAACACTGATGCAAATGATACTAACAAAGACCCTGAACCTGAACGAATCGCATCTGATCCTGAACCTGAACCAATCGCATCTGATCCTGAACCAATCCCATCTGCGGTCGAAAAGGAGCttgataagaaagaaaatgaaacgGATAAGCAGAATTCTGTAACTCTGTGTTCCATTAAAAGCGAGCCACAGGAGGAAGACGATACTCATAGTACTATAGAAGTGGAATCCACGAATAGCAGTGAAATGCTATTGAATCCCATGGCAGTCAGCGGGACAGAGGACACGATCATGGAGGCCGATTCCACGCAGAGGTCTAACGCGGCTGGCGCACCATCTAAGAAGAAGTTAAGACGCGGTCCTCACACTCATTTTAGAGGAACGCGTGTTTTTAAGCAGAAGTGTCATCACTGCCAGATATTCCTGCACTCCAAGTACACGTACATGAAGCACATGAAGAGGTTCCACAGTAAACAAAACGGCATTGAAAATTCAGGGTCACAGAACGACGACGAGGAGATTGAAGATTTGGAAGATGAACTGATCAGCATGGAAAAGGACTCACCGCTGACGCAAGTCCAACAGGACATTATTAGTCAGCTGAAAACCTTTTCTTGCTACTCTTGCGAACAGACGTTTAATGATCGACGCAGCACTCTCTCTCACATACGTCAACATATGCCCGATTTGAGACCGTATACATGTATCGCCTGCCTGACGGAGTTTCCAGATCGATCGATGTATCAGTTGCACTGTGGAGCTTCCTTCGAGTGCGCCATGAAGATCGCCCTAGTTGTACCGAAACACGGTAACGAACAATACTTTACATGCAACATGTGCCTGCGCCCGATGCCTGGTAGGAAGGAGTTGCTCAGCCACTTGTCGAAGCACTCTGACAAACAGTACGAGGAGATGATGTCACCAACGCGAGCTCCGCCCAAGCTGAAGCCGATGGCGCCGTTGCcgtcgaaaaataaaaatcgcgATAAGATCATTAACGGGCCTTACAAGAACGGCGATCCGGCGCATAATCATGCCTGCGATCTGTGCGGTATGATCTATCGATACCAACCTAACATGGTCAAGCACAAACAGATGTGCATGCGATTGGACCCGGAAAGCAGAGTGCTGTACAGATGCGTGCATTGTTACATGACTTTCCTCGTGTTCAAGAAGTTTCATTATCACGTCACGGCCGACCACAAGAAGAAGAATGTTACTTGTTCCGAATGCTACGCCGAATTCCGATCGCCCAGTGATTTCTTGACCCATTACGAGACCCATCGCGCAACAATGCAGGCCAATCGACAAGTGCAGCACGACGGTACCTCGCAGAATGCAGTCCAAGCGCCATTGAAGGAACGCAACGCTTATGAAACAAATGTCAAGTCAAGAATCAGTTCGCGAATATCAAGTCAGAAGTATAGCTGCCCCCTTTGTGCCGAGAAGTTCTCCACGAGGGTCGAGCTGAACGAGCATCGGACTCTCCATCTCAAAGTGAAGATATACTCGTGTGTCATTTGCCGCAGTATGTTCAGCAGCGCCGGTGCCTTGGAGATACACATGAGGGACCACGGTATCGAGGACCCGAACGAGAGGAACGCCAACGTTGCCTGCATGGAATACGGCAGCTTGGACGAGGATGTGAGAATCGAGAAAGATTCGATGAATGCTAGTGCCACCTCGGATCCAGGTACGCAGATTCACGAGTGTGGCGAGTGCGGTAAGGTACTGTCCAGTTACGCTAATCTCCGGCGACATGCTAAAATCGCTCACCGGAACTGTAAGATGTACGATTGTGTCGAGTGCTCGCGTATGTTCATGCGTAAAGATCTGTATGAGCAGCATATGTTAGTTAAACATAACTCTGCGAAGACAATGCTGCAGTGTCCGCAATGCCCTAAGAGTTTCGTCTTCCAATCAAACTTCACTTATCACTTTCGTACCGCCCATCTCGAAAAATCGCAAAATGGTTATGCTTGCGACATCTGCGGCAAGGTCTTCGTCGAGGAAGCATCTTTGAAAATACACAGGGGCTGGCACAACCGTGCAAACTCGCGTCTTAGCACTCGATTTATACTGGGGAATCAGAAAGTGTCTAACGACCCGCAGAAAGAATCTAATAGCGTCGAGTCTGGTGAGAATTCAGAACGACCGGCGAGAGCACGAAAGTCCTTCCCAAATCCTCCACCTCAATCGCCAACGAAGACATCAGGGAGTTTCCAATGTCAAGTATGCAATGACAAGTTCAACGATGTTACAGAGCTGAGGACCCATCTGTGGGACGTCCACTGCGCTCGTAACAAGGCGGAGAAAAGTTTCTCCAACGACGATCTTCAATGCGAACTTTGCACGAACATTTTCCCCGATCAGGAGACCCTGGCATCTCATATGCAATGGCACAAGGCCAATCCGATTCTCAGCGACATACAAAAGGCGTTCGCCTGCGATATATGCGGCAAGTCTTACAGTTCGAAGAAGGTTCTGTGGAAGCACAAGAGGCTTCACAAGGCTACAGTTGTGGCCTCGCTCAAGTTCCAATCTTTAGCCAGAAAACCGATGGCCACACAGTTCCTGTGCAACTTTTGCCGCAAGGTCTTCTCGAGCAACCAGTCTCTGCAGCGTCACAAACTTTCCTTCCACAGTGGTGAATCACTGAACCAACAGCGCGCGCAACAACAACTATACAACAGCAATCGAACCTCGTCGTACGAGGACGAGCCGAAAGCGAAGCGTTTGAAGTTTGAGATCGAAAATGACAATTCACAGGCCAAGCTATCGCCTTTCGCAATGGACTTCGCCGGTGAGAGAAGGAAGCCAGTCATGTGCCACGTATGCAAGAAAATGTTCCCCAATATGAGCGTGCTGTACAAGCACAAGCAAATGGTCCATAAAGCCCGAAAAGGGATGGTGCCCGAATGCATTCCGATGTCGACTCAGGATGGCAAGTTTTCATGTAACATCTGCTTCAAGGAATTCCCTGGTCTGTCGAATCTGCGACAGCATTTTACGATCAAGCACAAGAAGACGGCAGCTGCCGAAGCCAGCAACACATCGAGCAATGACAGATTGGTGCTCCCGACACCGACTAAGGTACCCGAACGGCCAAAGGAATTTGAAGTGTCCTACAATAACGTGATGTACAGTTGCAAGCTGTGCAAGCAGTGCCACGTCTTCAATAAGGAGTCCATCATGAGCCATATCACTAATGTGCACAACACAGTGTACCAGGCCGACAGCAAGACGTTCCATAGAGAGACCAATCTGAGCACTTACGTAGTGAAGGACGCGATCGGAGCTACTTGCCCGCAATGTGACGTCAAGTATCCTAATAACAGAGCTCTGAAGATACACTATGTTAAATTCCACGATGATACCGATTAA
Protein Sequence: MDEDVVEMLETVEARNVENVCRLCLSADGPRSSVFETREDEEKDSSGVPLAAKIQACLSIQITATDRLSTLICENCVKSVNQWHIYKESCLRSQDKLQEWLANQMQSNPKVVTIKDEPMDLDEDNVEIISETTNNLEQPHSPIRTVEKDGRNSEKGQDVTDNTDANDTNKDPEPERIASDPEPEPIASDPEPIPSAVEKELDKKENETDKQNSVTLCSIKSEPQEEDDTHSTIEVESTNSSEMLLNPMAVSGTEDTIMEADSTQRSNAAGAPSKKKLRRGPHTHFRGTRVFKQKCHHCQIFLHSKYTYMKHMKRFHSKQNGIENSGSQNDDEEIEDLEDELISMEKDSPLTQVQQDIISQLKTFSCYSCEQTFNDRRSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYQLHCGASFECAMKIALVVPKHGNEQYFTCNMCLRPMPGRKELLSHLSKHSDKQYEEMMSPTRAPPKLKPMAPLPSKNKNRDKIINGPYKNGDPAHNHACDLCGMIYRYQPNMVKHKQMCMRLDPESRVLYRCVHCYMTFLVFKKFHYHVTADHKKKNVTCSECYAEFRSPSDFLTHYETHRATMQANRQVQHDGTSQNAVQAPLKERNAYETNVKSRISSRISSQKYSCPLCAEKFSTRVELNEHRTLHLKVKIYSCVICRSMFSSAGALEIHMRDHGIEDPNERNANVACMEYGSLDEDVRIEKDSMNASATSDPGTQIHECGECGKVLSSYANLRRHAKIAHRNCKMYDCVECSRMFMRKDLYEQHMLVKHNSAKTMLQCPQCPKSFVFQSNFTYHFRTAHLEKSQNGYACDICGKVFVEEASLKIHRGWHNRANSRLSTRFILGNQKVSNDPQKESNSVESGENSERPARARKSFPNPPPQSPTKTSGSFQCQVCNDKFNDVTELRTHLWDVHCARNKAEKSFSNDDLQCELCTNIFPDQETLASHMQWHKANPILSDIQKAFACDICGKSYSSKKVLWKHKRLHKATVVASLKFQSLARKPMATQFLCNFCRKVFSSNQSLQRHKLSFHSGESLNQQRAQQQLYNSNRTSSYEDEPKAKRLKFEIENDNSQAKLSPFAMDFAGERRKPVMCHVCKKMFPNMSVLYKHKQMVHKARKGMVPECIPMSTQDGKFSCNICFKEFPGLSNLRQHFTIKHKKTAAAEASNTSSNDRLVLPTPTKVPERPKEFEVSYNNVMYSCKLCKQCHVFNKESIMSHITNVHNTVYQADSKTFHRETNLSTYVVKDAIGATCPQCDVKYPNNRALKIHYVKFHDDTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00765843;
90% Identity: iTF_00765843;
80% Identity: -