Lace004229.2
Basic Information
- Insect
- Leptothorax acervorum
- Gene Symbol
- -
- Assembly
- GCA_035220615.1
- Location
- JASTWQ010000021.1:749779-752422[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.3e-06 0.00041 22.0 0.9 1 23 90 112 90 112 0.98 2 14 5.7e-07 0.0001 23.9 0.5 1 23 118 141 118 141 0.96 3 14 0.018 3.2 9.8 0.6 1 23 147 169 147 169 0.97 4 14 1.6e-05 0.0028 19.4 3.9 1 23 175 197 175 197 0.96 5 14 0.00071 0.13 14.2 1.3 1 23 203 225 203 225 0.94 6 14 4.5e-05 0.0079 18.0 4.3 1 23 231 253 231 253 0.99 7 14 0.007 1.2 11.1 1.2 1 19 259 277 259 282 0.95 8 14 2.9e-05 0.0051 18.6 2.3 3 23 434 454 432 454 0.97 9 14 2.5e-05 0.0044 18.8 3.6 1 23 460 483 460 483 0.96 10 14 2.5e-05 0.0044 18.8 0.7 1 23 489 511 489 511 0.98 11 14 2.7e-06 0.00047 21.8 2.7 1 23 517 539 517 539 0.98 12 14 0.049 8.7 8.4 1.3 1 23 545 567 545 567 0.88 13 14 1.2e-05 0.0021 19.8 0.9 1 23 573 595 573 595 0.97 14 14 7.5e-05 0.013 17.3 0.5 1 21 601 621 601 622 0.95
Sequence Information
- Coding Sequence
- ATGGAAGGGCACATTAATGTCGAGAAAACCCGATCAACGGTATCCagagaaaaatatctttcatcAACTCGTCTTGGCGATTTGGAGGAAAGATTGGAAAGAGACAATTTGGCAGATTCTCATCTGAACAATTCTGAGCAAACGCAAAAGTCTCAAGAGAACCCCACGATGAACTCTCAAGGATGTACGGAACGATCGAAACGATTATCGGAACAACATGCCGGATTAACTCGATCGAGGGCGACGGAGGGGAACGGATGTGGCCCTCACAAGTGTGAAGAGTGCGGGAAAGTTCTTTCCACATCGTACAATCTGCTAATTCATCGCAACATTCATGCTGGCGTACGACCCTACATCTGTTCCAATTGCGACAAGAGCTTCCGATCGGCGTCCGGTCTGAACAGGCATGTGAAATACGTCCACGACGGTGTTAAAAATTTCGCCTGCGACGTTTGCGGCCGTCATCTCGCCTCGAGGGCGTCGAGGGACGAGCACAGGCGCACCCACTCCGGCGAGAGGCCCCACGTATGTGAGACCTGCGGCAAATCCTTCAAGCAAAAGGCATCCCTGCACGTGCACCGACTCTACCATTCCCAGTTCCTGCCGCATCGTTGCGTTCTGTGCGACCGCGGTTTCAGGAGGAAGCAGGAATTAGATAAACACGCGTCCTGGCACTCCAATCGAAAGCCGTACACCTGCGATATTTGCGACGAGCATTTCCGCAGTAAAGGCTGCGTCGCCCGTCATCGGCGCACTCATACCAATCAGCGTTTGCACATTTGCGCGATTTGTGGGGCCAGATTCGCTCAGGAACGATATCTGAAGAGACACTGTGGCAATTTACACACGGCTGCATCCATattGAAGAGTGAGATCATCATTCACGATCGGATAATCTCCCACAGTTATTCTCGGCGAGCGTATAAAATGGCagaatacagaaataaaattaattcaaccCAAACTAAAACGTCCAATATAATCGATGGAAATTCGGAGAGTACTATTTCTCCTGCagataatatcaataataataaattagccGAATATTTGTCTTCTACAAGTGTATCTCCTCGTCAAATATCCTCATCAAATAAATTGACAAATGACACGAAGAAGAAAAGTGCAGAAGACAAAGATTCTAATCCTGCTAGTCAGACGCGAGCAAATCGCACGAAAGCTACGCTTTATACACGGCAAGAACCTGCAGCGGAAGTGAACGAGTCTAATGAATGTCTTGAGAAGAGCGTGAAACAGTCCAAGGCCAAAAAGACTGCCTGCACCAGCCCAGCGATGATCTGCAAATTTTGTAACAAGAAGTTTCGCTCGCGGAAAAGCTACTGGGCCCACGTACGCACGCACTCGGACGAGAAATCATACACGTGCCACATCTGCGGAAAGCAATTTGTTCAGAGCGGTAGTCTATATTATCACCTGAAACACGTGCACGATGGCGTGAAGAATCACACCTGCGATATATGCGGCCGCAGCTTCGCCATGAAGACCGCCATGGAGGACCATCGACGTATCCATACCGGTGAACGCCCATACGTGTGCCACACTTGTGGAAAGACGTTCAAGACCAAAGCGTCTCTCTACATACACAGCAAGATACATACGGATGAGTTCCCGTATAAGTGCACCTATTGCGTCAAAAGATTCCGCTGGAGACAACAGATGCTGGGTCACCTGACAGTACATACAGGTGAGAAAAATCACATGTGCGACGTATGCGGCAAGGGTTTTGGCGTGAAGAACGACCTGACCAGGCACAAACGCGTTCATTCCGAGGAAAAGCCGTATACATGTCAGCAATGTGGCATCAGTTTCGGTCAGAAACGTTATCTCAAAAATCACGAACGCTTAAAGTTAGGGACGTGTAGGTACTCGCAAAGTTCAAATCGAATTGAATCCGATTAG
- Protein Sequence
- MEGHINVEKTRSTVSREKYLSSTRLGDLEERLERDNLADSHLNNSEQTQKSQENPTMNSQGCTERSKRLSEQHAGLTRSRATEGNGCGPHKCEECGKVLSTSYNLLIHRNIHAGVRPYICSNCDKSFRSASGLNRHVKYVHDGVKNFACDVCGRHLASRASRDEHRRTHSGERPHVCETCGKSFKQKASLHVHRLYHSQFLPHRCVLCDRGFRRKQELDKHASWHSNRKPYTCDICDEHFRSKGCVARHRRTHTNQRLHICAICGARFAQERYLKRHCGNLHTAASILKSEIIIHDRIISHSYSRRAYKMAEYRNKINSTQTKTSNIIDGNSESTISPADNINNNKLAEYLSSTSVSPRQISSSNKLTNDTKKKSAEDKDSNPASQTRANRTKATLYTRQEPAAEVNESNECLEKSVKQSKAKKTACTSPAMICKFCNKKFRSRKSYWAHVRTHSDEKSYTCHICGKQFVQSGSLYYHLKHVHDGVKNHTCDICGRSFAMKTAMEDHRRIHTGERPYVCHTCGKTFKTKASLYIHSKIHTDEFPYKCTYCVKRFRWRQQMLGHLTVHTGEKNHMCDVCGKGFGVKNDLTRHKRVHSEEKPYTCQQCGISFGQKRYLKNHERLKLGTCRYSQSSNRIESD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00765831; iTF_01421713; iTF_01405945; iTF_01409383;
- 90% Identity
- iTF_00765831;
- 80% Identity
- -