Basic Information

Insect: Harpagoxenus sublaevis
Gene Symbol: -
Assembly: GCA_030770355.1
Location: JASTWR010000012.1:1880228-1882875[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.2e-06 0.0004 22.0 0.9 1 23 90 112 90 112 0.98

2 14 5.5e-07 9.9e-05 23.9 0.5 1 23 118 141 118 141 0.96

3 14 0.017 3.1 9.8 0.6 1 23 147 169 147 169 0.97

4 14 6.8e-06 0.0012 20.5 2.2 1 23 175 197 175 197 0.96

5 14 0.00068 0.12 14.2 1.3 1 23 203 225 203 225 0.94

6 14 4.3e-05 0.0078 18.0 4.3 1 23 231 253 231 253 0.99

7 14 0.0067 1.2 11.1 1.2 1 19 259 277 259 282 0.95

8 14 2.8e-05 0.005 18.6 2.3 3 23 434 454 432 454 0.97

9 14 2.4e-05 0.0043 18.8 3.6 1 23 460 483 460 483 0.96

10 14 2.4e-05 0.0043 18.8 0.7 1 23 489 511 489 511 0.98

11 14 2.6e-06 0.00046 21.8 2.7 1 23 517 539 517 539 0.98

12 14 0.048 8.7 8.4 1.1 1 23 545 567 545 567 0.88

13 14 6.7e-06 0.0012 20.5 1.0 1 23 573 595 573 595 0.98

14 14 7.2e-05 0.013 17.3 0.5 1 21 601 621 601 622 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.2e-06	0.0004	22.0	0.9	1	23	90	112	90	112	0.98
2	14	5.5e-07	9.9e-05	23.9	0.5	1	23	118	141	118	141	0.96
3	14	0.017	3.1	9.8	0.6	1	23	147	169	147	169	0.97
4	14	6.8e-06	0.0012	20.5	2.2	1	23	175	197	175	197	0.96
5	14	0.00068	0.12	14.2	1.3	1	23	203	225	203	225	0.94
6	14	4.3e-05	0.0078	18.0	4.3	1	23	231	253	231	253	0.99
7	14	0.0067	1.2	11.1	1.2	1	19	259	277	259	282	0.95
8	14	2.8e-05	0.005	18.6	2.3	3	23	434	454	432	454	0.97
9	14	2.4e-05	0.0043	18.8	3.6	1	23	460	483	460	483	0.96
10	14	2.4e-05	0.0043	18.8	0.7	1	23	489	511	489	511	0.98
11	14	2.6e-06	0.00046	21.8	2.7	1	23	517	539	517	539	0.98
12	14	0.048	8.7	8.4	1.1	1	23	545	567	545	567	0.88
13	14	6.7e-06	0.0012	20.5	1.0	1	23	573	595	573	595	0.98
14	14	7.2e-05	0.013	17.3	0.5	1	21	601	621	601	622	0.95

Sequence Information

Coding Sequence: ATGGAAGGGCACATTAATGTCGAGAAAACCCGATCAACGGTATCCAGCGAAAAATATCTTTCATCAACTCGTCTTGGCGATTTGGAGGAAAGATTGGAAAGAGACAATTTGGCAGATTCTCATCCGAACAATTCTGAGCAAACGCAAAAGTCTCAAGAGAACACCACGATGAATTCTCAAGGATGTACGGAACGATCGAAACGATTATCGGAACAACATGCCGGAATAACTCGATCGAGGGCGACGGAGGGGAACGGATGTGGCCCTCACAAGTGTGAAGAGTGCGGGAAAGTTCTTTCCACATCGTACAATCTGCTAATTCATCGCAACATTCATGCTGGCGTACGACCCTACATCTGTTCCAATTGCGACAAGAGCTTCCGATCGGCGTCCGGTCTGAACAGGCATGTGAAATACGTCCACGACGGTGTTAAAAATTTCGCCTGCGACGTTTGCGGCCGTCATCTCGCCTCGAGGGCGTCGAGGGACGAGCACAGGCGCACCCACTCCGGCGAGAGGCCCCACGTATGTGAGACCTGCGGCAAGTCCTTCAAGCAAAAGGCATCCCTGTACGTGCACCGACTCTACCATTCCCAGTTCCTGCCGCATCGTTGCGTTCTGTGCGACCGCGGTTTCAGGAGGAAGCAGGAATTAGATAAACACGCGTCCTGGCACTCCAATCGAAAGCCGTACACCTGCGATATTTGCGACGAGCATTTCCGCAGTAAAGGCTGCGTCGCCCGTCATCGGCGCACTCATACCAATCAGCGCTTGCACATTTGCGCGATTTGCGGGGCCAGATTCGCTCAGGAACGATATCTGAAGAGACACTGTGGCAATTTACACACGGCTGCATCCATatCGAAGAGTGAGATCATCATTCACGATCGGATAATCTCCCACAGTTATTCCCGGCGAGCGTATAAAATGGCAGaatacagaaataaaattaattcaaccCAAACTAAAACGTCCAATATAATCGATGGAAATTCGGAGAGTACTATATCTCCTGCagataatatcaataataataaattagccGAATATTTGTCTTCTACAAGTGTATCTCCTCGTCAAATATCCtcgtcaaataaattgacaaATGACACGAAGAAGAAAAGTGCAGAAGACAAAGATTCTAATCCTGCTAGTCAGACGCGAGCAAATTGCACGAAAGCTACGCTTTATACACGACAAGAACCTGCAGCGGAAGTGAACGAGTCTAATGAATGTCTTGAGAAGAGCGTGAAACAGTCCAAGGCCGAAAAGACTGCCTGCACCAGCCCAGCGATGATCTGCAAATTTTGTAACAAGAAGTTTCGCTCGCGGAAAAGCTACTGGGCCCACGTACGCACGCACTCGGACGAGAAATCATACACGTGCCACATCTGCGGAAAGCAATTTGTTCAGAGCGGTAGTCTATATTATCACCTGAAACACGTGCACGATGGCGTGAAGAATCACACCTGCGATATATGCGGCCGCAGTTTCGCCATGAAGACCGCCATGGAGGACCATCGACGTATCCATACCGGTGAACGCCCATACGTGTGCCACACTTGTGGAAAGACGTTCAAGACCAAAGCGTCTCTCTACATACACAGCAAGATCCATACGGATGAGTTCCCGTACAAGTGCACCTATTGCGCCAAAAGATTCCGCTGGAGACAACAGATGCTGGGTCACCTGACAGTACATACAGGTGAGAAAAATCACACGTGCGACGTATGCGGCAAGGGTTTTGGCGTGAAGAACGACCTGACCAGGCACAAACGCGTTCATTCCGAGGAAAAGCCGTATACATGTCAGCAATGCGGCATCAGTTTCGGCCAGAAACGTTATCTCAAAAATCACGAACGCTTAAAGTTAGGGACGTGTAGGTACTCGCAAAGTTCAAATCGAATTGAATCCGATTAG
Protein Sequence: MEGHINVEKTRSTVSSEKYLSSTRLGDLEERLERDNLADSHPNNSEQTQKSQENTTMNSQGCTERSKRLSEQHAGITRSRATEGNGCGPHKCEECGKVLSTSYNLLIHRNIHAGVRPYICSNCDKSFRSASGLNRHVKYVHDGVKNFACDVCGRHLASRASRDEHRRTHSGERPHVCETCGKSFKQKASLYVHRLYHSQFLPHRCVLCDRGFRRKQELDKHASWHSNRKPYTCDICDEHFRSKGCVARHRRTHTNQRLHICAICGARFAQERYLKRHCGNLHTAASISKSEIIIHDRIISHSYSRRAYKMAEYRNKINSTQTKTSNIIDGNSESTISPADNINNNKLAEYLSSTSVSPRQISSSNKLTNDTKKKSAEDKDSNPASQTRANCTKATLYTRQEPAAEVNESNECLEKSVKQSKAEKTACTSPAMICKFCNKKFRSRKSYWAHVRTHSDEKSYTCHICGKQFVQSGSLYYHLKHVHDGVKNHTCDICGRSFAMKTAMEDHRRIHTGERPYVCHTCGKTFKTKASLYIHSKIHTDEFPYKCTYCAKRFRWRQQMLGHLTVHTGEKNHTCDVCGKGFGVKNDLTRHKRVHSEEKPYTCQQCGISFGQKRYLKNHERLKLGTCRYSQSSNRIESD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00885327;
90% Identity: iTF_00885327;
80% Identity: -