Lace005043.2
Basic Information
- Insect
- Leptothorax acervorum
- Gene Symbol
- -
- Assembly
- GCA_035220615.1
- Location
- JASTWQ010000027.1:227919-232244[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0063 1.1 11.2 3.8 1 23 20 43 20 43 0.96 2 20 1.4e-05 0.0025 19.5 0.5 1 23 49 71 49 71 0.97 3 20 0.0037 0.65 12.0 6.3 1 23 77 99 77 99 0.98 4 20 0.00022 0.04 15.8 2.2 1 23 105 127 105 127 0.98 5 20 0.035 6.3 8.9 5.5 1 23 133 155 133 156 0.96 6 20 0.00011 0.02 16.7 2.6 1 23 174 197 174 197 0.95 7 20 0.79 1.4e+02 4.6 0.8 3 23 208 228 206 228 0.95 8 20 5.9e-07 0.0001 23.9 1.2 1 23 234 256 234 256 0.98 9 20 9.6e-06 0.0017 20.1 1.3 1 23 262 284 262 284 0.97 10 20 3.9e-07 6.9e-05 24.5 0.7 1 23 290 312 290 312 0.99 11 20 0.56 1e+02 5.1 0.4 3 23 349 370 348 370 0.96 12 20 0.00011 0.019 16.8 1.0 1 23 376 399 376 399 0.97 13 20 0.72 1.3e+02 4.7 0.3 2 23 405 427 404 427 0.95 14 20 0.14 25 7.0 0.2 1 23 433 456 433 456 0.77 15 20 0.048 8.5 8.5 0.3 2 23 463 485 462 485 0.94 16 20 5.8e-06 0.001 20.8 2.3 1 23 505 528 505 528 0.96 17 20 0.0027 0.48 12.4 0.1 1 23 539 561 539 561 0.95 18 20 0.0051 0.91 11.5 4.0 1 23 567 589 567 589 0.97 19 20 6.5e-07 0.00011 23.8 1.1 1 23 595 617 595 617 0.98 20 20 2.2e-05 0.004 18.9 0.1 1 21 623 643 623 644 0.96
Sequence Information
- Coding Sequence
- ATGGTAGGTAGCGTTTACAAATTGAAGAAGCGACGATGGGGCAGATCGCGCGACGTGCACCAATGCGTCAAATGCGGGGCTCGCTTCCGTCACACGCGAAAGCTCGTGGAGCACCTGAAGAACCTGCACAATATCGACCGGGCGTTCAGCTGCGACGAATGCAACAAGACGTTTCGCAGCCCGATGAACATAGCTCGTCACAAACTGATCCACACGGGGGTGAAAATGTTCACCTGTGATCTCTGCGATTACTGCACCAATCAGAAGTCCAATCTGGAGTGTCATCTTCGGCGGCACGCGAAGGACTATAGCTTCAAGTGCGAGACGTGCGGCAAGGGCTTCTTCCACAACACCGAGTACCTGGAGCATCAAAACGCGCACACGAACAAGAGACTGTATCGTTGCGAGCATTGCTCCAAGCAGTACTTGTACAAGAAGAATTTATCGGTGCACCTGGTGACGCATCACGTCGGCACCGGCAAGCAGGCCGCCGCGATCGTGAGAAGCGCGAGGATGAGGCACGCGTGCAAATTCTGCCCGGAGAGATTCGTGTACAAGAGATTGCTGGAGAGGCACATGAAGAACCAGCATGGATTCGCGAACGCACCGGCGAAGCACCTGTGCGACCTGTGCGGCGCGGAACTCTCGTCGATGAGACGACTGTTGGTGCACAAACGCAATCACGCGGGCGAGAGGATTTTCGAGTGCGAAACGTGCGACAAGAAGTTCGCCAGCAAGGAGAACCTGAGCATTCACAAGCGGACGCACACGGGCGACAAGCCGCACGTGTGCCCGCAGTGCGACCGCGGTTTCACCCAAAGGACATCCCTGGTCCTTCATCTGCGGTACCACTCGGGTCAGAGGCCTTACCAGTGCTTGGACTGCGGCAAGGGATTCGTGTCCAACACTTTACTCAAGAGGCATCGCAAAGTGCATGAGAAGATCGTGCAGCCGAAGCTCCAGTGGACGAATAATCACGATTTGAAAGTGAAGAACGAAGACGTGCCTGATCTTGGACAGAAATTCGAAAGTGGTGAGAAGATCTGCGAGCTGTGCCAGGCAAAATTTCACTTTGTTACCAGACTGGTCGCACATCTAAGGATAGCGCACGGCATCCTTCGACCCTTCAAGTGCGTCACCTGCGACAAGAATTATCCCCAGCAGTTCATGCTTAACGCCCACGTGAAGAAGTCGCACACGCCGAAGACCGTGCCGTGTAGCCAGTGCAGCTTCATGGGTGTCAACGTGACCGACGTGGAGAGGCACAGGCGACGACGTCACCGAGCCCCGCCGCAATTCACGTGCGAAATTTGCAGCCAGGATTTCGCCGATAACAAGGACACTCTGATCGCGCACACGACGATGCACGATCTTATGCAGTATCAGCGATGCAACGCGTGCGGTAGCATCTTCAACGACGTGTACAGCTTGAAGGAACATAATCGTCTCTACCACTACGATCCTGCGTCGGACGAGAAGTCGTTCGAGGAGTCCAGCGAGAACGAGTCCGAGCACAAATGCGACATTTGCGGCAAGGTCTACAAGTATAGGTCGATGTTGAAGCAGCACAAGATCAGGGCTCATGGTGACCAGTCGAGCCACGAGAGACGCAGGTACCTTTGCGCACTGTGCGGCAAGGAGTTGAAGACCGCGAAGGGCCTCGAAATCCACAACAGGTCGCACACCGGCGAAAAACCGTATACCTGCGAGGTTTGCGGCAAGTGTTTCGCCTGTGAGACCCTGTTGAGGACCCACAAAGTCACCCACACCGGAGAAAGAAAGTACTCGTGCGATCAATGCGGCAAGGCTTTCACGCAGAGATCCACGCTGGTTGTTCACAAGCGATATCACACGGGCGAACGACCGTACGTTTGTCCTCGATGCGGTAAGGGTTTCGTCACACGAACTGTTCTTAATACTCACATGAAATCCTGTCGTTGA
- Protein Sequence
- MVGSVYKLKKRRWGRSRDVHQCVKCGARFRHTRKLVEHLKNLHNIDRAFSCDECNKTFRSPMNIARHKLIHTGVKMFTCDLCDYCTNQKSNLECHLRRHAKDYSFKCETCGKGFFHNTEYLEHQNAHTNKRLYRCEHCSKQYLYKKNLSVHLVTHHVGTGKQAAAIVRSARMRHACKFCPERFVYKRLLERHMKNQHGFANAPAKHLCDLCGAELSSMRRLLVHKRNHAGERIFECETCDKKFASKENLSIHKRTHTGDKPHVCPQCDRGFTQRTSLVLHLRYHSGQRPYQCLDCGKGFVSNTLLKRHRKVHEKIVQPKLQWTNNHDLKVKNEDVPDLGQKFESGEKICELCQAKFHFVTRLVAHLRIAHGILRPFKCVTCDKNYPQQFMLNAHVKKSHTPKTVPCSQCSFMGVNVTDVERHRRRRHRAPPQFTCEICSQDFADNKDTLIAHTTMHDLMQYQRCNACGSIFNDVYSLKEHNRLYHYDPASDEKSFEESSENESEHKCDICGKVYKYRSMLKQHKIRAHGDQSSHERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHKVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00869051;
- 90% Identity
- iTF_01409381;
- 80% Identity
- -