Lace023533.1
Basic Information
- Insect
- Leptothorax acervorum
- Gene Symbol
- -
- Assembly
- GCA_035220615.1
- Location
- JASTWQ010000259.1:100489-103346[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-07 0.00031 21.8 0.0 1 39 13 51 13 56 0.92 2 2 7.5 7.5e+03 -1.8 0.0 3 15 515 529 515 532 0.82
Sequence Information
- Coding Sequence
- ATGGCACGCAcatatcgtcgcaaaacgactcccgtcgacgaGGAGAAGCTGAAGAAGGCAGTTGTTGCGGTAAAAGTAGATAAATTGAGCGTTtccgcagccgcaaaacaatttgATGTCCGCAGAACCACGTTGAACAACTGGTTAAGGAAGAACGCTGAAATAGAACACTTGGATGACGTGGTCGCACTACATAAAGGACGCTTCTCGgttatgGACTGTGAAACTGAAAAGACTTTAgtggaatacttagtacattgcaacgatatgtactttgggctctctgcgaaggaaacccgtggtttagcctttgatttagccaaaaaattgaatctgaaggtaccagcatcgtgggaagccgctcgcatggccggtgAAGATTGGCTAAGCGGCTTTCTCAAACGACATCCAACATTATCCATACGCAAACCAGAAGCGACAAGTTTAGCACGTGCCACCAgtttcaatcgaacaaatgtAGAAAGGTTCTTTGCGCTGCTAAGATCTTTGATGGATAAACATCATTTCCAGgctcactgcatatggaatatggatgaGACGGGAATTACTACCGTTCAGACACCGAATAGAGTCATCGGACGTCGAGGAATGAAACAAGTCGGGCGAGTGACTTCTGCGGAAAGAGGAACCCTCGTAACTTTGGCGATGGCGGTGTCAGCAACCGGGCATTCTctacctccattttttatttttccgcgtAAAAATTTCAAGGAACATTTCCTTAACGGCGGACCACCAGGCTGCACAGGTGCAGCGAATTCAAGTGGCTGGATGAATGCGGAGCATTTTGTCCAGTTTTTACACTTCTTCCAGTCCCATGTGCGTGCTTCCGTCGACGCCCCAGTTTTACTGATACTCGACAATCACGAATCACATTTGTCCATCGCTGGTCTCGAATTTTGTAAAGCGAATGGAATCATTCTCCTGTCATTACCGCCGCATTGCTCGCACAAAATGCAACCGCTGGATCGCACCGTGTTTGGCCCGTTGAAGAAAAGTGTACACTCACAGTGTGATAACTGGATGACGTCGCATCCTGGTAGAACAATGACGATATACGATATCCCCGGAATCGTGGCTAAGTCACTGCCAAATGCCGTAACGCATCAAAATATTGTGTCCGGGTTTgaatgcactggaatttctccattcaacccggacattttccaggaatacgaatttttgccgAGCAGTGTTACGGATAGGGAGATGCCTTCTACTTCCGCTCATCCCGAAGAAGTCTACCTCAACGCAGCCGACCTGGACACAGCCAACCCGGACACAGCCGATTCGGAGACAACCGAACCCGACGCAGCCGACCAGAACGAATTCGATCCCTCGGCTTCTTCCATGTCTCGTCCTGGTGATACACAGAACAAATGTGAGGACTTCCGGTTCGGCGGGCGGAGCGGGCGGTCGGCCCGGAGTGGAGAGGATTGGGGAAAGGTGTTTTTGGGAAGGAAAGAAGCCGAGAGGATGAGGTGGAGTGGTGGAGTAAGTGGAGGAGATACAGAGGAGGTCGAGGACATGGAGGAAGCGTCGAGGATGGTGCAGAGAGAGAATGGAAGCGGTGGCGCTGTTGGTTGGGCGGTAAGTTGGCGGCGTGACGGGAGCGGTGGAAGAGTCGAGGCGGCGCTGGGTGTCGGCCGTAGGCTGACACCACGGCGGGACGCCGAGGCGCCGGTGTAG
- Protein Sequence
- MARTYRRKTTPVDEEKLKKAVVAVKVDKLSVSAAAKQFDVRRTTLNNWLRKNAEIEHLDDVVALHKGRFSVMDCETEKTLVEYLVHCNDMYFGLSAKETRGLAFDLAKKLNLKVPASWEAARMAGEDWLSGFLKRHPTLSIRKPEATSLARATSFNRTNVERFFALLRSLMDKHHFQAHCIWNMDETGITTVQTPNRVIGRRGMKQVGRVTSAERGTLVTLAMAVSATGHSLPPFFIFPRKNFKEHFLNGGPPGCTGAANSSGWMNAEHFVQFLHFFQSHVRASVDAPVLLILDNHESHLSIAGLEFCKANGIILLSLPPHCSHKMQPLDRTVFGPLKKSVHSQCDNWMTSHPGRTMTIYDIPGIVAKSLPNAVTHQNIVSGFECTGISPFNPDIFQEYEFLPSSVTDREMPSTSAHPEEVYLNAADLDTANPDTADSETTEPDAADQNEFDPSASSMSRPGDTQNKCEDFRFGGRSGRSARSGEDWGKVFLGRKEAERMRWSGGVSGGDTEEVEDMEEASRMVQRENGSGGAVGWAVSWRRDGSGGRVEAALGVGRRLTPRRDAEAPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00885009;
- 90% Identity
- iTF_01407196;
- 80% Identity
- -