Lace013618.1
Basic Information
- Insect
- Leptothorax acervorum
- Gene Symbol
- -
- Assembly
- GCA_035220615.1
- Location
- JASTWQ010000095.1:544930-546644[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.3e-09 4.3e-06 27.7 0.0 2 39 14 51 13 54 0.91
Sequence Information
- Coding Sequence
- atgttacacacgtatcgtcgcaaaacgactcccgtcgacaaggagcaactgaagaatgcagttgtggcggtgaagagagataaaatgagcgctcatgcagccgcaaaacagttcggtgtcccgagaaccacgttgaacaggtggctaaagaagaaccaggatgaaatacaacacgtggatgacgtggtcgtactACATGAAGGAGGCGTaacggttatgaacgcggaaagtgaaaaaactttggtggaatacttagtacattgcaacgatatgtactttgggctatcagcgaaggaaacccgtggtttagcctttgattttgccaaacaattgaatctgaaggtaccagcatcgtgggaaaccgctcgcatggccggtaaagattggctaagcagctttctcaaacgacatccagtattatccatacgcaaaccagaagcgacaagtttagcacgtgccaccagtttcaatcgaacaaatgtGGAAAGGTTCTTCACGCTGCTGAGATCTCTGATGAATAAATATCATTTCCAggctcactgcatatggaatatggatgaGACGGGAGTAACAACCGTTCAGACACCGAATAGAGTCATCGGACGTCGAGGAGTGAAACAAATCGGGCGAGTGACTTCTGCGGAAAGAGGAACTCTCGTAACATTGGCGATGGCGGTGTCAGCAACCGGGCGTTCTctacctccattttttatttttcctcgtaaaaaattcaaaccacATTTCCTTAACGGCGGAACACCAGGCTGCACAGGTAAAGCGAATCCAAGTGGCTGGATGAACGCGGAGCATTTTGTCGAGTTTTTACAGTTTTTCCAGTCCCATGTGCGTGCTTCCGTCGACGCCCCAGTTTTACTGATACTCGACAATCACGAATCACATTTGTCCATCGCTGGTCTCGAATTTTGTAAAGCGAATGGAATCGTTCTCCTATCATTACCGCCGCATTGCTCGCACAAAATGCAACCGCTGGATCGCACCGTGTATGGCCCGTTAAAGAAAAGTGTACACGCACAGTGCGATTACTGGATGACATCGAATCCTGGTAGAACAATGACGATATACGACATCCCCGGAATCGTGGCTAAAGCACTGCCACTCTCTATAACGCATCAGAATATTGTGTCCGGGTTTgaatgcactggaatttctccattcaacccggacattttccaggaatacgaatttttgccgAGCAGCGTTACGGATAGGGAGATGCCTTCTACTTCCGCTCATCCCGAAGAAGCCAACCTCAACGCAGCCGACCCGGACACAGCCGATTCGGAGACAACCGAACCCGAAGCAGCCGACCAGAATGAATTCGACCCCTCGGCTTCTTCCATGTCTCGTCCTGGTGATACACAGAACTTGAGCGCGACGCTTCAAAGTATTCGAGCCTTTCCTAAGGCCGCTCCGAGGCAACAGACTCGTAAAggacgaaaacgaagaaagaccgccgttcttactgactcgcctgaaatgatggaattggcagctgagcaggcggagtccatgcggaaaaaaaagtaa
- Protein Sequence
- MLHTYRRKTTPVDKEQLKNAVVAVKRDKMSAHAAAKQFGVPRTTLNRWLKKNQDEIQHVDDVVVLHEGGVTVMNAESEKTLVEYLVHCNDMYFGLSAKETRGLAFDFAKQLNLKVPASWETARMAGKDWLSSFLKRHPVLSIRKPEATSLARATSFNRTNVERFFTLLRSLMNKYHFQAHCIWNMDETGVTTVQTPNRVIGRRGVKQIGRVTSAERGTLVTLAMAVSATGRSLPPFFIFPRKKFKPHFLNGGTPGCTGKANPSGWMNAEHFVEFLQFFQSHVRASVDAPVLLILDNHESHLSIAGLEFCKANGIVLLSLPPHCSHKMQPLDRTVYGPLKKSVHAQCDYWMTSNPGRTMTIYDIPGIVAKALPLSITHQNIVSGFECTGISPFNPDIFQEYEFLPSSVTDREMPSTSAHPEEANLNAADPDTADSETTEPEAADQNEFDPSASSMSRPGDTQNLSATLQSIRAFPKAAPRQQTRKGRKRRKTAVLTDSPEMMELAAEQAESMRKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00885027; iTF_01407173; iTF_00885029; iTF_01407183; iTF_01409016; iTF_01409001; iTF_00765483; iTF_01407185; iTF_01407188; iTF_01422845; iTF_00765484; iTF_01408115; iTF_01408117; iTF_01409019; iTF_01422846; iTF_01408103; iTF_01409003; iTF_01409010; iTF_01407184; iTF_00765480; iTF_00765481; iTF_00765497; iTF_00765482; iTF_01409009; iTF_00885010; iTF_00885013; iTF_01409015; iTF_00885019; iTF_01407196; iTF_01407195; iTF_01407197; iTF_00885021; iTF_00885006; iTF_00765494; iTF_00885015; iTF_00765498;
- 90% Identity
- iTF_00885013; iTF_00765481; iTF_00765483; iTF_00765484; iTF_00885010; iTF_00765497;
- 80% Identity
- -