Lace001464.1
Basic Information
- Insect
- Leptothorax acervorum
- Gene Symbol
- lola_1
- Assembly
- GCA_035220615.1
- Location
- JASTWQ010000006.1:1326442-1329714[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.8 9.9e+03 -2.2 0.2 4 22 102 120 101 122 0.77 2 2 2e-08 2e-05 25.6 0.1 9 40 405 437 404 442 0.87
Sequence Information
- Coding Sequence
- ATGGAGGACGACCAGCAGTTCTGTCTCAGGTGGAACAACCACCAAAGTACGCTCATACAAAACTTCGACACACTCCTGGAAAGCGGGACGCTGGTCGACTGCACCCTGGCGGCGGAGGGGAAGACTCTCAAGGCCCACAAAGTTGTCCTCTCCGCGTGCAGTCCATACTTTGAGTGCCTCCTCAGCGAACACTACGACAAGCATCCAGTCTTCATACtcaaagatgtaaaattcaaaGAACTTAAGGCAATGATGGATTACATGTATAGAGGGGAAGTAAACATTTCCCAAGACCAATTGGCAGCACTCCTCAAAGCCGCCGAGTCTCTGCAAATTAAGGGCCTTTCGGAAAGTAAAACCGCTGGCAGTAGTAAGACGGAGTCCAGGCCACAGAAAACCGTCTCACAACCTACAGCACCGTCGTTAGACATTCCACACGCGTCTTCCGGTCTGACGATAGAAAAGAACAAAGTTCCTAGGCAGAGTTTGGCGCAAAGTTGCGTGGGGGATTTACCAGAGGATACGGCTAGTCCTCAGGTGTCGAAAGGGCATTCCTCGAGGGAAGGTTCGCAAAGTCCAACCTcgaggaaaagaaagaggatTCGAAGAAGAAGTCTAACCGAAGATAATACGATAGACAACCAGGATGCATCGAATTCCAGCGACATGCCTCAGCAAAGCATGGGTGTACCGGCGCTTGGTATCGCGCCAGTGGCAGATGAGAAAGTACACGCAGATCCAACAGACTCTCTCGGCAGGTCAGCTTTAATGACGCAATTGACGAAACCCGCCGACGAGATGCTGCAGCTACCCCTGGAAAAACCTGAGCCAAACGATAATCTCATCGAGCCAAAGTCTGAATACCTAGATGATACAGAGGAGGGTGTCGAAGATTTGACGCTGGATGACGATATGAATGATCTTAATGACATGGAACAGGACAACAATCGAGCTGGACCGTCCCATGACTCCGCCCAACACCCCGGTGGGGGGGCGCGGTCTCGGTCGAGAGGGAATTTGGTTAGTGATGACGGTGATGGTCGTGGTAACGGTGGCGGAGGCGGTGGTGCCCCATGGGCTTCCCATTTCCTCGAATGTAAAAAAGTGCCAAACATGAGGCGGCCGCGCCCGGACGTTGACGTAGGCGCGTTACTTAAATCACTGGCGAACAAGCAGGGCAGAAAGTATAGCTTAGACTCGGTTAAAATGTCCCTGGAGGCAATATTGCAACAGGGAGTTAGCACCACTCAGGCGTCCGAGATGTACGGCATTAATCGCTCAACGCTGCAGTtctatttgaaaaaattgaacgTCGTCAGGAGGAGATGGAGACAGCAACCTTCTAGTACCCCGGTCCAGCCTAGACAGACTTAG
- Protein Sequence
- MEDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKTLKAHKVVLSACSPYFECLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSESKTAGSSKTESRPQKTVSQPTAPSLDIPHASSGLTIEKNKVPRQSLAQSCVGDLPEDTASPQVSKGHSSREGSQSPTSRKRKRIRRRSLTEDNTIDNQDASNSSDMPQQSMGVPALGIAPVADEKVHADPTDSLGRSALMTQLTKPADEMLQLPLEKPEPNDNLIEPKSEYLDDTEEGVEDLTLDDDMNDLNDMEQDNNRAGPSHDSAQHPGGGARSRSRGNLVSDDGDGRGNGGGGGGAPWASHFLECKKVPNMRRPRPDVDVGALLKSLANKQGRKYSLDSVKMSLEAILQQGVSTTQASEMYGINRSTLQFYLKKLNVVRRRWRQQPSSTPVQPRQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01354704;
- 90% Identity
- iTF_00885251; iTF_00128897; iTF_00129665; iTF_00129857; iTF_00129096; iTF_00128330; iTF_00127375; iTF_00127579; iTF_00128123; iTF_01354704; iTF_01354536;
- 80% Identity
- iTF_00885251;