Amia024288.1
Basic Information
- Insect
- Aphaenogaster miamiana
- Gene Symbol
- lola
- Assembly
- GCA_003063725.1
- Location
- NJRN01000017.1:1097252-1100776[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6 5e+03 -2.2 0.2 4 22 102 120 101 122 0.77 2 2 1.2e-08 1e-05 25.6 0.1 9 40 405 437 404 442 0.87
Sequence Information
- Coding Sequence
- ATGGAGGACGACCAGCAGTTCTGTCTCAGGTGGAACAACCACCAAAGTACGCTCATACAAAACTTCGACACACTCCTTGAAAGCGGGACGCTGGTCGACTGCACGTTGGCGGCGGAGGGGAAGACTCTCAAGGCCCACAAAGTAGTCCTCTCCGCGTGCAGTCCATACTTTGAGTGCCTCCTCAGCGAACACTATGACAAGCATCCAGTCTTCATACTCAAAGATGTTAAATTCAAAGAACTTAAGGCAATGATGGACTATATGTACAGAGGGGAAGTAAATATTTCCCAAGACCAATTGGCAGCACTCCTCAAAGCCGCCGAGTCTCTGCAAATTAAGGGCCTTTCGGAAAGTAAAACCGCTGGCAGTAGTAAGACGGAGTCTCGGCCACAGAAAACCGTCTCACAACCCACAGCACCGTCGTTAGACATTCCACACGCGTCTTCCGGTCTGACGATAGAAAAGAACAAAGTTCCTAGGCAGAGTTTGACGCAAAGTTCCGTGGGGGATATACCAGAGGATACGGCCAGTCCTCAGGTGTCGAAAGGGCTCTCCTCGAGGGAAGGTTCGCAAAGTCCAACatcaagaaaaagaaagaggtttCGAAGAAGAAGTTTAACTGAAGATAATACGATAGAGAATCAAGATGCATCGAATTCTAGCGACATGCCTCAACAAATGGGTGTACCGGCGCTTGGTATCGCGCCAGTGGCAGACGAAAAAGTACACGCAGATCCCACAGACTCTCTCGGCAGGTCAGCGTTAATGACGCAATTGACGAAACCCGCCGACGAGATGTTACAGCTGCCACTCGAAAAACCCGAGCCAAACGATAATCTCATCGAGCCAAAGTCTGAATACCTAGACGACAATGAGGAGGGCGTCGAAGACCTGACGCTGGATGAAGATATGAACGATCTTAATGACATTGAACAGGACAACAATCGAGCTGGACCGTCCCATGACCCCGCCCAACACCCCGGTGGGGGGGCGGGAGCGCGGTCTCGGTCGAGAGGGAATTTGGTTAGTGGTGATGGTGGCGGTCGTGGTaatggcggtggcggtggtgcCCCATGGGCTTCCCATTTCCTCGAATGTAAAAAAGTGCCAAACATGAGGCGGCCGCGCCCGGACGTTGACGTAGGCGCGTTGCTTAAATCACTGGCGAACAAGCAGGGCAGAAAGTATAGTTTAGACTCGGTTAAAATGTCCCTGGAGGCAATATTACAACAGGGTGTTAGCACCACTCAGGCGTCCGAGATGTACGGCATTAATCGCTCAACGCTGCAGttctatttgaaaaaattgaacgtCGTCAGGAGAAGATGGAGACAACAACCTTCTAGTACCCCGGTCCAGCCTAGACAGACTTAG
- Protein Sequence
- MEDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKTLKAHKVVLSACSPYFECLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSESKTAGSSKTESRPQKTVSQPTAPSLDIPHASSGLTIEKNKVPRQSLTQSSVGDIPEDTASPQVSKGLSSREGSQSPTSRKRKRFRRRSLTEDNTIENQDASNSSDMPQQMGVPALGIAPVADEKVHADPTDSLGRSALMTQLTKPADEMLQLPLEKPEPNDNLIEPKSEYLDDNEEGVEDLTLDEDMNDLNDIEQDNNRAGPSHDPAQHPGGGAGARSRSRGNLVSGDGGGRGNGGGGGAPWASHFLECKKVPNMRRPRPDVDVGALLKSLANKQGRKYSLDSVKMSLEAILQQGVSTTQASEMYGINRSTLQFYLKKLNVVRRRWRQQPSSTPVQPRQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01354704;
- 90% Identity
- iTF_00885023;
- 80% Identity
- iTF_00128330;