Ldol056894.1
Basic Information
- Insect
- Leptopterna dolabrata
- Gene Symbol
- -
- Assembly
- GCA_954871275.1
- Location
- OX940982.1:44652472-44660966[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00062 0.2 14.3 6.0 1 23 104 126 104 127 0.96 2 17 0.00073 0.23 14.1 0.9 2 23 144 165 143 165 0.97 3 17 3.8e-06 0.0012 21.2 0.7 1 23 171 193 171 193 0.97 4 17 3.4e-05 0.011 18.2 0.8 1 23 199 221 199 221 0.98 5 17 0.0029 0.92 12.2 0.6 1 23 228 250 228 250 0.97 6 17 0.028 8.8 9.1 3.1 1 23 256 278 256 278 0.98 7 17 3e-06 0.00094 21.6 0.3 1 23 284 306 284 306 0.96 8 17 4.2e-07 0.00013 24.2 0.2 1 23 312 334 312 334 0.98 9 17 0.017 5.3 9.8 1.4 2 23 342 363 342 363 0.94 10 17 3.2e-05 0.01 18.3 1.2 1 23 427 449 427 449 0.97 11 17 1.3e-05 0.0043 19.5 1.7 1 23 510 532 510 532 0.98 12 17 0.0059 1.9 11.2 0.7 1 23 538 560 538 560 0.98 13 17 8.5e-06 0.0027 20.1 0.3 1 23 566 588 566 588 0.98 14 17 0.0014 0.44 13.2 3.2 1 23 594 617 594 617 0.94 15 17 0.016 5.1 9.8 0.0 2 23 621 643 620 643 0.95 16 17 2.3 7.4e+02 3.0 0.5 2 23 650 672 649 672 0.90 17 17 0.077 24 7.7 0.2 1 20 842 861 842 864 0.94
Sequence Information
- Coding Sequence
- ATGGCGGAAGTCCAGAAAATGGACGAAGGCTTCAAAGAGGAATTTGTGTTCGTTGAAGAATATTTTCCTTTGGATCTCCACGAAGAGGAGGTCGTCGCGGAGACCGAGGAGGCCCAGGAAGTCGCCGTCCACCACACCGAACACCAGGAAATCATTCATGCAACCAACAGCATTCTCCCCGACAGCTATGATCCAACTGACCCGTCGCAATGGGCGCAGGAAGAGGTCATCATCGAGTCCTCAGATAACCCTCCAGTCGCGGCCGCTGTCATCAAGCTTGAGAACGAGGACCCCAGTCAGTCCCACGTCTACGAGTGCTACAAGTGCGCCAAGCGATTCAACTTTAAAGACAAACTCTTCAAACACATGAAATTACATCACGCCCGAGGGGATGACGTCATGATAGAGAGGGATGGAAAACGAATCTGGACGTGCACTCAGTGTGACAAAACCTTCATATCTCGCAAGGGTTCCATCATCCACCAGCGCACCCATACGGGAGAGAGGCCATATTCTTGCTCCGTTTGTCAGAAACGATTCATTGACTCCAGCACGCTCATGAAGCATCAAGTTATACACCAGGCAGTTCGACCATTCAGCTGTCTCGTCTGCCGAAGGGGATTCAACCAAAAGGTTGCCCTCCAGCGCCATGAGAGGACTCACGGTCAGATCCAACCCAACTTCAAGTGCAAGTTCTGCCCTAAGACGTTCCTTGTGGGGAGCAGCTTGCAGGCTCATGAGAAGATCCATTCTGGGATCAAGCCTTACACTTGCCAGTACTGCCCTAGCAGGTTCCACACGTCCACAGCCCAGCGCCAGCACGAGAGAGTCCACACCAACGAGAGGCCTTATGCCTGTAGCTACTGCCCCAAAGCTTTCAAAGACTCTGGAACACTCTTCAAACACCAAGTGATACATTCTGGTATTCGACCATTCGTCTGCCCGATTTGCTCTCAAGGTTTCACGCAAAAAGTCGCACTGAGGAAGCACATCCGATCTCACGTTTCGAGAAACCATGACAACACTTGTGAAGTTTGTGAAACCCAGTTTTTCTCCAAAGAGGATCTGTGCACTCACGTGGAAGACCACATCGAGCAACACCCCAGTATCACACAAGTGAAAATTATAGCGACATCATCAATGAGAAACAAACAAGAACTTCTGGGTGCGGAAAGTGCTGATAAGTCCCCTGAACCTGAACGGACAGAAAGCGACCTCAGCGATTTAGCCACACTCTGTGACGTAGCAATATCCACTGCTGGCGAGTTGACTCACAGTTTCCCCTGCCTCCACTGCGGCATGAGTTTCAGGCGAAAAAGATCGTTGGACTCCCATTTAGCAATCCACAGGTCGTCTACTTCAGTCGACGCTCAAGTGTCCAATGACCTCGATGTCGAAGTTGGGACTGTCATTGCAACTGGACCTTCAGAGACCCTGGTGGTCTCGGGTGGAAACAACGAAAGGGGAAGTGGCAAACACTCGTCTCCGATTGCGACCAACAATGCCTCCAAACACCCCAAAAgGTTTTTCTACTGTGAACGGTGTGATAAAACCTTCTCATCGCGAAACGGCTACATCATTCACCAGAGGAGTCATACTGGAGAACGACCTTACCCATGCAGGTGGTGCGAGAAGGCATTCGGTGATTCAGCAACGCGTCACAAGCACGAGCGCATTCACACGGGTGAGAGGCCGTTCAAGTGTTCAAGGTGTCCCCGCGCCTTCAATCAGCGAGCCGCCCTCCGTGCCCACCAGGTCACCCATACCGTCGACCGGGCCTTCCTCTGCAAGTACTGCCCCTCAAGTTTCCCCTACTACGCCACGCTCAAGCGTCACCAGCAGTCTTGCCATTCCAGCTTACCCTGTCCCCTCTGTGCAGCCGCTTTCCCTGATCCCAGGAAGCTCTATGTTCACATCAAGAACATCCACGCTGTGGAAACCAACCTCACCTGCTCCCTCTGCGACACTGTCATGTTTGCTGATACTACCGAGTTCTGCGAGCACATGGTTTGGCATGGCAAGCAGCAGCAGAATGATCCCAAGGAGTATCGCAGGAAATGCGCCGACATGGCCTATCTTGTCAAGCTGCTGAATGGACGTATAGATTGTGCTGAGCTCCTCTCGCTTACTAACTTCGCTGTTCCGTATTTCAACTCCCGACCGATGCCACGTTTTCTGGTTCCATTCAATCCTACAAACTATATTTCCGACCCATCTGCCGAATCCCCAGAGAAGCGAATGCCCTACTTGGTGGTGGATGCTGAAGTCGAGAAGGAAACTGAAACACAGATTGAGATCATCACGACGCAAGCCATCAAAGAAGAGATCGTGGAAGAAGAGGAAATCATTACCGAAGAGGTGTACACGACTGAAGTCACCTTTGAGgagatgggagaagctgagacCGCGTCCTTTGTTGAGGAAGGTTACTCGGAAGAGGTCTACACCCAGGATGACCCCGCGGTTGAGGAGATCATCGAGCAGACGATCGTCACGGAGGACTTCCCCATCGTCGACGGTGCTTACAGCTGTGACGTTTGCGGTCTCCTGTTCCACGAGAAGGAGGCTTTACAGGAGCACGTACCCCTGCACTTCTAG
- Protein Sequence
- MAEVQKMDEGFKEEFVFVEEYFPLDLHEEEVVAETEEAQEVAVHHTEHQEIIHATNSILPDSYDPTDPSQWAQEEVIIESSDNPPVAAAVIKLENEDPSQSHVYECYKCAKRFNFKDKLFKHMKLHHARGDDVMIERDGKRIWTCTQCDKTFISRKGSIIHQRTHTGERPYSCSVCQKRFIDSSTLMKHQVIHQAVRPFSCLVCRRGFNQKVALQRHERTHGQIQPNFKCKFCPKTFLVGSSLQAHEKIHSGIKPYTCQYCPSRFHTSTAQRQHERVHTNERPYACSYCPKAFKDSGTLFKHQVIHSGIRPFVCPICSQGFTQKVALRKHIRSHVSRNHDNTCEVCETQFFSKEDLCTHVEDHIEQHPSITQVKIIATSSMRNKQELLGAESADKSPEPERTESDLSDLATLCDVAISTAGELTHSFPCLHCGMSFRRKRSLDSHLAIHRSSTSVDAQVSNDLDVEVGTVIATGPSETLVVSGGNNERGSGKHSSPIATNNASKHPKRFFYCERCDKTFSSRNGYIIHQRSHTGERPYPCRWCEKAFGDSATRHKHERIHTGERPFKCSRCPRAFNQRAALRAHQVTHTVDRAFLCKYCPSSFPYYATLKRHQQSCHSSLPCPLCAAAFPDPRKLYVHIKNIHAVETNLTCSLCDTVMFADTTEFCEHMVWHGKQQQNDPKEYRRKCADMAYLVKLLNGRIDCAELLSLTNFAVPYFNSRPMPRFLVPFNPTNYISDPSAESPEKRMPYLVVDAEVEKETETQIEIITTQAIKEEIVEEEEIITEEVYTTEVTFEEMGEAETASFVEEGYSEEVYTQDDPAVEEIIEQTIVTEDFPIVDGAYSCDVCGLLFHEKEALQEHVPLHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00145829;
- 90% Identity
- -
- 80% Identity
- -