Basic Information

Insect: Leptopterna dolabrata
Gene Symbol: -
Assembly: GCA_954871275.1
Location: OX940981.1:6394097-6430457[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00059 0.19 14.3 0.4 2 23 150 171 149 171 0.95

2 13 0.038 12 8.6 0.0 1 23 177 200 177 200 0.96

3 13 0.00034 0.11 15.1 1.4 1 23 206 228 206 228 0.95

4 13 0.00035 0.11 15.0 0.2 1 23 234 258 234 258 0.92

5 13 5.7e-08 1.8e-05 27.0 0.5 1 23 264 286 264 286 0.98

6 13 2e-06 0.00063 22.1 0.2 1 23 292 314 292 314 0.96

7 13 3.3e-05 0.011 18.3 2.3 1 23 320 342 320 342 0.97

8 13 8.4e-05 0.027 17.0 4.2 1 23 349 371 349 372 0.94

9 13 1.8e-05 0.0056 19.1 0.4 2 23 486 507 485 507 0.95

10 13 0.00036 0.11 15.0 2.0 1 23 513 535 513 535 0.98

11 13 3.5e-09 1.1e-06 30.8 1.8 1 23 541 563 541 563 0.99

12 13 5.7e-05 0.018 17.5 2.4 2 23 574 595 573 595 0.97

13 13 8.2e-06 0.0026 20.2 1.1 1 23 601 624 601 624 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00059	0.19	14.3	0.4	2	23	150	171	149	171	0.95
2	13	0.038	12	8.6	0.0	1	23	177	200	177	200	0.96
3	13	0.00034	0.11	15.1	1.4	1	23	206	228	206	228	0.95
4	13	0.00035	0.11	15.0	0.2	1	23	234	258	234	258	0.92
5	13	5.7e-08	1.8e-05	27.0	0.5	1	23	264	286	264	286	0.98
6	13	2e-06	0.00063	22.1	0.2	1	23	292	314	292	314	0.96
7	13	3.3e-05	0.011	18.3	2.3	1	23	320	342	320	342	0.97
8	13	8.4e-05	0.027	17.0	4.2	1	23	349	371	349	372	0.94
9	13	1.8e-05	0.0056	19.1	0.4	2	23	486	507	485	507	0.95
10	13	0.00036	0.11	15.0	2.0	1	23	513	535	513	535	0.98
11	13	3.5e-09	1.1e-06	30.8	1.8	1	23	541	563	541	563	0.99
12	13	5.7e-05	0.018	17.5	2.4	2	23	574	595	573	595	0.97
13	13	8.2e-06	0.0026	20.2	1.1	1	23	601	624	601	624	0.98

Sequence Information

Coding Sequence: ATGTATCCGCGAGTGCACCAGTACGGGGCGGACGACGTCAAGATCGATGAAATATGCCGCCTCTGCCGGTCTTCAAAAGGCGTCATGTCGTACATATTTAGCTCGGTCGGTGTCGACACTacggttccggtgtcttcgaGGATCACCAGCATCGTCAACATAAGAATGCACGAAGGGGACGGCCTGCCATCTCTCATCTGCCACCGATGCCTCTATCACGTCGAGCAGTTGAACGAATTCAAAACGCTCTGCGAACAGTCGGATCTCTTGCTTCGTCAGTACGTTTCATACCAGGAACGAACAAATGGTTCGGCATCCGACGAAGAACCCACAATAAAGTTGGAGGAGAACGACAGTGACGGAGACAACGCTATGGAACTTTACCAAGCGATGGACCAGAGCGACGATCAAATGAGCGATGACGacgattccgatgaaaattACCTGGTCTGCACTACGTGCAATAAGAGGTTCACCTTGCAGGAGGCGTTGGACAGGCATTCTCTGATTCATACTCAGGACGGGCCGTTTCCTTGCGACTATTGTGCAGCTCAGCTGCCGGACAAAGCGTTGCTACGAGTACACTGGAGGCAGGTGCACGCCGGCAACAAGTCCCACATGTGCCAGACGTGCGGAGAGTCGTTCTACCTCAAGGAAAATCTCGCGAAACACTCTGCGAGGCACGACAAACTGAAACCCTATAGATGCGTCGAACCTTCTTGTAAAAAAGCCTTCGCCTATCGCTCCGACCTGAGGAAGCATGCCATCATACACTCAGGAATCAGACCCTACGTATGCCCAATATGCTTCAAAGCGTTCACGAGAAGCACCAACTTGAACAAGCACGCTAGAGTTCACAACGGCACCAAACCTTTCCCGTGCAGCGACTGCGACAAGATGTTCGCGACGCGGGGTGATCTGATGCGACATTCTCTCATCCACACTGGAGAAAAACCTTATTCGTGTTCCATCTGCTTCCTGTCCTTCAATAGGAAGGACAAGCTTACGAGACACGAAAAACTGCATACCGAACCGCAGAGGGCCCACGTTTGTTTTGAATGTCCAACTTCATTCAACAGGAAAGAGGATCTCACGAAACATGTGCAGTTTCACCATTACTCATCAATTTTCAATGAGGACAACGTcatcaaagaagaaaaagagGATTCGCAGCGCGGCAGCGTCAATGGAAACAACGAAGAAAACGACAGCGAGGAAACGGCAACAGATCTGAGAGTGAAGCACAAGAGGGACAACGATGGCTCAAATGACGTAGAATCCAGATTCAGCCAAATGTACAACGGTGCCAAAGAAAATGGTTGCCACAATTTGCCAGGTTCCCCGATGAACCTGAAGTTGCAACTGAACGACGATTCCGTTGGGGATGTCAGCACTGAAGCCGTAGTCATCAGCGTCGATCCGTCCAGCTGGGAGGGCTCCGACGCCAGGTCCAACCAGTGCGAGGTCTGCTCGAGGACGTTCAAAGACCGCGAGGAACTCCAGAAACACGTCGCTCTGCACGGCAAAAGCAGGGACTTCGTCTGCGAGATCTGCTTCAAAGGTTTCCACCAGAGGCGCGAGCTCGTCCGCCATTCACTCACTCACACCGGCTTCAAACCGTATTCCTGCGAGACCTGCGGGAAGGCCTTCTCCCGCAGGGACAAGCTCACGAGGCACATGAGGACTCACGGTTTGTCCAGACCAGGTAAGAACCCGTCGACTTGCGGCGTCTGCCTCAAGAGCTACTCTTCCAGGCACAATCTTTCACGGCATTTGCTGACCCACACCAACTACAAACCTTACCAGTGCAACACCTGCACCGCCTCGTACTCCCGCAAAGACAAACTCGTCAAACACATCAAATCAGTACACAGCATTGAATAA
Protein Sequence: MYPRVHQYGADDVKIDEICRLCRSSKGVMSYIFSSVGVDTTVPVSSRITSIVNIRMHEGDGLPSLICHRCLYHVEQLNEFKTLCEQSDLLLRQYVSYQERTNGSASDEEPTIKLEENDSDGDNAMELYQAMDQSDDQMSDDDDSDENYLVCTTCNKRFTLQEALDRHSLIHTQDGPFPCDYCAAQLPDKALLRVHWRQVHAGNKSHMCQTCGESFYLKENLAKHSARHDKLKPYRCVEPSCKKAFAYRSDLRKHAIIHSGIRPYVCPICFKAFTRSTNLNKHARVHNGTKPFPCSDCDKMFATRGDLMRHSLIHTGEKPYSCSICFLSFNRKDKLTRHEKLHTEPQRAHVCFECPTSFNRKEDLTKHVQFHHYSSIFNEDNVIKEEKEDSQRGSVNGNNEENDSEETATDLRVKHKRDNDGSNDVESRFSQMYNGAKENGCHNLPGSPMNLKLQLNDDSVGDVSTEAVVISVDPSSWEGSDARSNQCEVCSRTFKDREELQKHVALHGKSRDFVCEICFKGFHQRRELVRHSLTHTGFKPYSCETCGKAFSRRDKLTRHMRTHGLSRPGKNPSTCGVCLKSYSSRHNLSRHLLTHTNYKPYQCNTCTASYSRKDKLVKHIKSVHSIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00145830;
90% Identity: -
80% Identity: -