Aluc008504.1
Basic Information
- Insect
- Apolygus lucorum
- Gene Symbol
- -
- Assembly
- GCA_009739505.2
- Location
- CM019178.2:14350389-14385946[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0018 0.15 12.7 0.2 2 23 179 200 178 200 0.94 2 13 0.3 25 5.7 0.0 1 23 206 229 206 229 0.95 3 13 0.0006 0.05 14.2 1.5 1 23 235 257 235 257 0.93 4 13 0.00035 0.029 15.0 0.2 1 23 263 287 263 287 0.92 5 13 5.6e-08 4.6e-06 26.9 0.5 1 23 293 315 293 315 0.98 6 13 5.6e-06 0.00047 20.6 0.1 1 23 321 343 321 343 0.96 7 13 3.2e-05 0.0027 18.2 2.3 1 23 349 371 349 371 0.97 8 13 8.2e-05 0.0068 16.9 4.2 1 23 378 400 378 401 0.94 9 13 4.2e-05 0.0035 17.8 0.3 2 23 516 537 515 537 0.95 10 13 0.00035 0.029 15.0 2.0 1 23 543 565 543 565 0.98 11 13 3.4e-09 2.8e-07 30.7 1.8 1 23 571 593 571 593 0.99 12 13 6.7e-05 0.0056 17.2 2.5 2 23 604 625 603 625 0.97 13 13 1.2e-05 0.00099 19.6 1.1 1 23 631 654 631 654 0.98
Sequence Information
- Coding Sequence
- ATGTATCCTCAAGCGCACCCCTACGGCGCGGACGACGTCAAGATCGATGAGATTTGCCGTCTCTGCCGGTCGTCGAAGGGCGTCATGTCGTACATCTTCAGCTCCGTCGGCGTCGACACGACGGTCCCCGTCTCCTCCAGGATCACCAGCATCGTCAACATAAGAATGCACGAAGGAGACGGTCTGCCATCCCTGATCTGCCACCGCTGCCTCTTCCACGTCGAGCAAATGAACGAATTCAAAACACTTTGTGAGCAATCGGACCTCCTACTCCGCCAGTACATCTCCTACCAGGTACTGTTGCAGATGGAAGATGAAGAGAAGAAAGGGCGAACGAAAAATTCTTTGAAGTCTTCGGGTGGCATTCAATGTTGCAATACGGAGAAAACCAACGGTTCACTGACCGACGACGAGCCTTCCATCAAGTTAGAAGAGAACGACAGCGACGCGGACAACGCGATGGAACTCTACCAGGCGATGGACCAGAGTGACGATCAGATGAGTGAAGATGATGATTCTGACGAAAACTATCTCGTATGTGCAACCTGCAACAAGAGATTTACGCTACAGGAAGCGTTAGACAGGCATTCCCTTATTCATACTCAGGATGGACCCTTTCCCTGCGATTATTGTGCAGCCCAAATGCCGGACAAGGCACTACTGCGAGTCCATTGGCGACAGGTGCATGCTGGGAATAAATCTCACATGTGCCAAACCTGCGGGGAGTCTTTCTACTTGAAGGAGAACCTCGCCAAACACTCAGTGAGGCACGACAAGCTGAAACCGTATCGATGCGTCGAACCTTCCTGCAAGAAGGCTTTTGCGTATCGATCTGACTTGAGGAAACACGCTATTATTCACTCAGGGATCCGACCGTACGTATGCCCGATCTGCTTCAAAGCGTTCACTCGGAGCACCAACCTGAATAAGCACGCCAGAGTCCACAATGGCAGCAAACCCTTCCCCTGTGCGGACTGCGACAAGATGTTTGCGACGAGAGGCGATCTGATGCGTCATTCTCTCATCCATACCGGCGAGAAACCTTATTCGTGTTCCATCTGCTTCCTGTCTTTCAACAGGAAGGACAAGCTTACCAGACACGAAAAGCTTCACACTGAACCACAAAGAGCGCACGTTTGTTTTGAATGTCCAACCTCCTTCAACCGAAAAGAGGATCTCACGAAACACGTTCAATTTCACCATTATTCTACAATTTTCGGTGAAGATAACGCTATTAAAGAAGAGAAAGATGAAAACTCGCAGGTCGGGAGTCTCAACGGGAACATGGAAGAGGTGGACAGCGAGGAAACCGCAACCGATCTGAGAGTCAAACACCGGAGAGAAGACGACGGTTCGAGTGAAACCGAAGCGAAAGTCAAGGGGATGAGCAATGGCTCCTTACCAACCAAGGAAAACGGTGTACACTCGCCAGGGTCGCCCATGAATTTGAAACTTGGATCGAATGAGGATTCTGTGGGAGGCACAGAGGCGGTCGTCATAAGCGTGGATCCTTCCAGCTGGGAGGGCTCAGACGCCAGAGCCAACCAATGCGACGTCTGCTCGAGGTCCTTCAAAGACCGGGAAGACCTTCTCAAACACGTCGCTCTTCACGGCAAGAGCCGCGACTTCGTCTGCGAAATCTGCTTCAAAGGGTTCCACCAGAGACGCGAGCTCGTCCGCCACTCGCTCACCCACTCGGGCTTCAAGCCGTACTCGTGCGAAACCTGCGGGAAGGCGTTCTCTCGCCGCGACAAACTCACCcggcacatgaggactcacgGGCTGGCCAGACCAGGTAAGAACCCGTCGACTTGCGGCGTCTGCCTCAAGACTTACTCCTCGAGGCACAACCTGTCTCGTCATTTGCTGACTCACACCAACTATAAGCCTTATCAGTGCAGCACCTGCACCGCCTCGTACTCCCGCAAAGACAAACTCGTCAAACATATAAAATCCATTCATGGTCTCTAA
- Protein Sequence
- MYPQAHPYGADDVKIDEICRLCRSSKGVMSYIFSSVGVDTTVPVSSRITSIVNIRMHEGDGLPSLICHRCLFHVEQMNEFKTLCEQSDLLLRQYISYQVLLQMEDEEKKGRTKNSLKSSGGIQCCNTEKTNGSLTDDEPSIKLEENDSDADNAMELYQAMDQSDDQMSEDDDSDENYLVCATCNKRFTLQEALDRHSLIHTQDGPFPCDYCAAQMPDKALLRVHWRQVHAGNKSHMCQTCGESFYLKENLAKHSVRHDKLKPYRCVEPSCKKAFAYRSDLRKHAIIHSGIRPYVCPICFKAFTRSTNLNKHARVHNGSKPFPCADCDKMFATRGDLMRHSLIHTGEKPYSCSICFLSFNRKDKLTRHEKLHTEPQRAHVCFECPTSFNRKEDLTKHVQFHHYSTIFGEDNAIKEEKDENSQVGSLNGNMEEVDSEETATDLRVKHRREDDGSSETEAKVKGMSNGSLPTKENGVHSPGSPMNLKLGSNEDSVGGTEAVVISVDPSSWEGSDARANQCDVCSRSFKDREDLLKHVALHGKSRDFVCEICFKGFHQRRELVRHSLTHSGFKPYSCETCGKAFSRRDKLTRHMRTHGLARPGKNPSTCGVCLKTYSSRHNLSRHLLTHTNYKPYQCSTCTASYSRKDKLVKHIKSIHGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00884480;
- 90% Identity
- -
- 80% Identity
- -