Lsyp022534.1
Basic Information
- Insect
- Leptopilina syphax
- Gene Symbol
- -
- Assembly
- GCA_032872505.1
- Location
- CM065472.1:46858389-46863447[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00051 0.099 14.5 1.5 3 23 424 446 422 446 0.95 2 10 0.00099 0.19 13.6 1.2 1 23 452 476 452 476 0.98 3 10 0.00015 0.029 16.1 0.5 1 23 482 506 482 506 0.97 4 10 0.00015 0.029 16.1 0.4 3 23 514 536 512 536 0.95 5 10 0.009 1.7 10.5 4.6 1 21 543 565 543 567 0.96 6 10 0.00024 0.046 15.5 0.7 2 23 575 598 574 598 0.95 7 10 1e-05 0.002 19.8 0.9 1 23 604 628 604 628 0.97 8 10 4.6e-05 0.009 17.7 0.6 1 23 634 658 634 658 0.96 9 10 0.00096 0.19 13.6 3.4 1 23 664 686 664 687 0.96 10 10 7.8e-05 0.015 17.0 0.3 2 23 757 781 756 781 0.94
Sequence Information
- Coding Sequence
- ATGTCTCGTAAAGGAACAACATCGGTTTATAGATCAAAACAAATTCCGCGGATATTTCAACGTCAACGAACAGCAACAAATGCTCGTTCCTGGTTAACCTCATTGATTCCCGAGGACGGTATTCCACTACGTGAACAATCAGTCGATCAAGCACATTATGATCTTATTCCAGGACCATCGTTCGATTATTATCATGTGCAAcaagaaaatgagaaaaaagaaGTATCAAGTCGATCGACAATGGTTAATAAGGAATTTATTGAGAAAACGTGGAACGACGAGAGCTGtcagaTAAATGAAGATAGCACGGGAACGCAAAGTATGGACTCAATGGAAAGGACCGGTGACGCAAATATTGAACAATGGTTTAAAGTCCGAACTGATTCCGTATCGAGCATCGATCTCGAGGGCATGAAAAATATGCCAAGCTACTTGGCCGATGAATTGTCGCACAATTTTCTCGAGAAGGATTCAAATTCCCTCTCGTACGATCCAATACTTCATGAACTTCAAAACGATAAATTATTGGACACATGCACAAAAGATGACGAATTCATTTTACCTGAATTTGCCCTCGATCCACTGGAACTCACACCCGATATGATGGTGGCTGGTGAAATTCTACCCTCGACCAGTGCATTAAATGTCACCCACGATTCATGTTTACCAGtccaacaacaacaacaaaccAATTCACTAAACGCCGATCACGATCTTTGCGATAAAGCCACACAATGCCATACTCGCGATTTCGACAACACAAATCTCGAATCATTAACGAAAAATGTTGTCAATAATCCGGAGAATTATCTCACCGAATTGAAGAGTATCGATCTTAATGAATTCACCGATTCGGAAATTGATCCAAAGGCAAATTTCAAGACACGAGATGTTAATAatatgatgaaaaaaatttccgacATGCAAGTTGTTTTGAGGGACGATGCAATGGTTGACACGTCGGATGGTGTGATGGCAGTTGTTGCAATATCGAcagataaaatttcaaatttaacacaaattgtCATTAATAATGGCACTGAGGAGCAGATTTATCAGGGTAAAACGTCGGAATTAATTGAGGCGACTGGAAATTTTTCGACAATTGACGCACAGAATATGTGGCAAGGAGGAGGGATTGAGAATGATGCTGAGAATATGACAATCAATAAACATGACATTCTAATAACGAGTGCACTTGAGGATTTGGGTATTACTGATGATATGCTGCAGCCAGTGTCAATTGCTGATCAAGGAAAAACTTGGATTTGTCCCAAAAAAGAGTGCCATCGTTATTTCAATCGTCTTTATGCCCTCAAGAGTCATTTACTGACTCACTACGGAGTGAGACCATTCAAGTGTGACTTTGAGGGATGCTCCTGGGCCTTCTACTCCGAATTCAAATTAAAACGACACAGAGAGACGCATCTGAAAAAGAAGGATTACGTTTGTGAGGAGGCCGATTGTCAACGGCGATTCACGACAATCTACAATCTTTGGAGTCACAAAAAATTGCACGAACGACCGAATAGAATTATTTGTCATGTGCCTGAGTGTGATGAGAAATTTCAAACGAAACGTGCCCTTGAAATTCACATGAAGTCACACGATCAACGACACGCGCCATATCAATGTAAACACGAGGGTTGCGGTAAGCGCTATTACAGCAGCAATGCACTGTCCTCGCATCAACGCTGCCACAGTTACAAGGAGACGGACATCAAATGTTCATGGCCAGGTTGCGGTAAGGTTTTCGATAAACCCTGTCGTCTCAAGGCGCACACACGCTCTCACACCGGTTGCAAGCCCTATTCGTGCACCTTTCCCGGTTGCCAGTGGGCCTTCGCCTCTTCGAGTAAATTAAAACGACATCAGAAGAAGCACACGAACGATAGGAAATTCGTTTGTGAAGTCGCGTCCTGTGGAAAGGCTTTCATGCGATCAGAACATCTCAAAGAGCACAGATTAACCCATTCTTTGGAGAGATATTTCCAATGCTACGTGTGCAATTCACGCTTCTCAGCAAAGAGCAGTCTCTACGTTCACATCAAGAAACACCATTCAAAAGTCGATTCAAGTAAATTAATCGCCTCAGGCGAGAGTCCGCCGGGCGATTTTCTATCATCCGAAGCGAATCAACAAAATGATGATCTCGATCTCGAGACCGAATTACAAACGGAAATAATAAGTCGCGAAATTTTCGGCTCTACGGACACAACTTTACACATTGAGCCAAATACAGAAGCAATTGTAGCAAAAAATTCACTTCCATGTCCCGTGGAGACTTGTACAAGAAGTTACACGACAAAATCATCTCTTCGCGCTCACGTACAAAAAATGCACGGTTCATCGATTCTCGAGGACGATATCGCTAGAGTCGAGTTGCCTGAGAATGTTGCCGATTCAAATAATGCCGATTTCATTGTCTACACGCCCTATTCAATGTCGCAGCCGAATAATGATCAAATGATCATGGTCGCGCCATGTGACGCCGTTGTTTTCAGCTCGTCAGAGAATAACGACATTCTCAATGAGACGGACAGTTTGAAAGTTGGCGGCGCTTCGGTGCTGAAgcgtaaaattgaaaatcaacgACGCAATAATCAGGGTTCGGCGAGGACCGGTCTAACTTATGCGGacgtttttaaattgaaggaACAAAATGCCGAGAGTGAAGAGACGGCCGTTGTTGGCGCACAGGACGTTATTTTGGGATCGTCCGATCTCGGTGAAGGTTTTCTCTTCACTGAGGACATACCCTCGATGTACTTTCAGGACGAGTGTCAGGTACTTTTACTAGATCCAGTCACTGCGGAGAATACAATCAATTTGCGTGATATCGTTTAA
- Protein Sequence
- MSRKGTTSVYRSKQIPRIFQRQRTATNARSWLTSLIPEDGIPLREQSVDQAHYDLIPGPSFDYYHVQQENEKKEVSSRSTMVNKEFIEKTWNDESCQINEDSTGTQSMDSMERTGDANIEQWFKVRTDSVSSIDLEGMKNMPSYLADELSHNFLEKDSNSLSYDPILHELQNDKLLDTCTKDDEFILPEFALDPLELTPDMMVAGEILPSTSALNVTHDSCLPVQQQQQTNSLNADHDLCDKATQCHTRDFDNTNLESLTKNVVNNPENYLTELKSIDLNEFTDSEIDPKANFKTRDVNNMMKKISDMQVVLRDDAMVDTSDGVMAVVAISTDKISNLTQIVINNGTEEQIYQGKTSELIEATGNFSTIDAQNMWQGGGIENDAENMTINKHDILITSALEDLGITDDMLQPVSIADQGKTWICPKKECHRYFNRLYALKSHLLTHYGVRPFKCDFEGCSWAFYSEFKLKRHRETHLKKKDYVCEEADCQRRFTTIYNLWSHKKLHERPNRIICHVPECDEKFQTKRALEIHMKSHDQRHAPYQCKHEGCGKRYYSSNALSSHQRCHSYKETDIKCSWPGCGKVFDKPCRLKAHTRSHTGCKPYSCTFPGCQWAFASSSKLKRHQKKHTNDRKFVCEVASCGKAFMRSEHLKEHRLTHSLERYFQCYVCNSRFSAKSSLYVHIKKHHSKVDSSKLIASGESPPGDFLSSEANQQNDDLDLETELQTEIISREIFGSTDTTLHIEPNTEAIVAKNSLPCPVETCTRSYTTKSSLRAHVQKMHGSSILEDDIARVELPENVADSNNADFIVYTPYSMSQPNNDQMIMVAPCDAVVFSSSENNDILNETDSLKVGGASVLKRKIENQRRNNQGSARTGLTYADVFKLKEQNAESEETAVVGAQDVILGSSDLGEGFLFTEDIPSMYFQDECQVLLLDPVTAENTINLRDIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00881503;
- 90% Identity
- iTF_00882420;
- 80% Identity
- -