Ldro031204.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptopilina drosophilae
Gene Symbol
-
Assembly
GCA_032873175.1
Location
CM065484.1:47684079-47688333[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00048 0.098 14.5 1.5 3 23 425 447 423 447 0.95
2 10 0.00093 0.19 13.6 1.2 1 23 453 477 453 477 0.98
3 10 0.00014 0.029 16.1 0.5 1 23 483 507 483 507 0.97
4 10 0.00014 0.029 16.1 0.4 3 23 515 537 513 537 0.95
5 10 0.0085 1.7 10.5 4.6 1 21 544 566 544 568 0.96
6 10 0.00022 0.046 15.5 0.7 2 23 576 599 575 599 0.95
7 10 9.9e-06 0.002 19.8 0.9 1 23 605 629 605 629 0.97
8 10 4.4e-05 0.0089 17.7 0.6 1 23 635 659 635 659 0.96
9 10 0.00091 0.19 13.6 3.4 1 23 665 687 665 688 0.96
10 10 7.4e-05 0.015 17.0 0.3 2 23 757 781 756 781 0.94

Sequence Information

Coding Sequence
ATGTCTCGTAAAGGAACAACATCGGTTTATAGTAGATCAAAACAAATTCCGCGGATATTTCAACGTCAACGAACAGCAACAAATGCTCGTTCCTGGTTAACCTCATTGATTCCCGAGGACGGTATTTCACTACGTGAACAATCAGTCGATCAAACACATTATGATCTTATTCCAGGACCATCCTACGATTATTATCATGTGCAAcaagaaaatgagaaaaaagatGTATCAAGTCGATCGACGACAATGGTTAATAAGGAATTTATTGAGAAAACGTGGAACGACGAGAGCTGTCagATAAATGAAGATAGCACGGGAACGCAAAGTATGGACTCAATGGAAAGGACCGGTGATGCAAACATTGAACAATGGTTTAAAGTTCGAACTGATTCTGTATCGAACATCGATCTCGAGGGCATGAAAAATATGCCAAGCTACTTGGCCGATGAATTGTCGCACAATTTCCTCGAGAAGGATTCAAATTCCCTCTCGTACGATCCAATACTTCATGAACTTCAAAACGATAAATTATTGGACACATGCACAAAAGATGACGAATTCATTTTACCTGAATTTGCCCTCGACCCACTGGAACTCACACCCGACATGATGGTGGCTGGTGAAATTCTCCCCTCGACCAGTGCATTAAATGTCAGCCACGATTCATGTTTACCagtacaacaacaacaacaatccGATTCACTAAACACTGATCATGATCTTTGCGATAAAGCAACGCAATGTCACACACGCGATTTCGATAACACAAATCTCGAGTCATTAACGAAAAATGTGAATAATCCGGAGAATTATCTCACCGAATTGAAGAGCATCGATCTTAATGAATTCACCGATTCGGAAATTGAACAAAAGGCAAATTACAAGACACGGGATGTTAATAATATGATGAAGAAAATTTCCGACATGCAAGTTGTTTTGAGGGACGATGCAATGGTTGATCAATCGGATGGTGTTATGGCAGTTGTTGCAATATCGACagataaaatttcgaatttaactCAAATTGTCATTAATAATGGCACTGAGGAGCAAATCTATCAGGGTAAAACGTCCGAATTAATTGAGGCGACTGGAAATTTTTCGACAATTGACGCACAGAATATGTGGCAAGGCGGTGGAATTGAGAATGATTCGGAGAATATGACAATTAATAAACATGACATTTTAATAACGAGTGCACTTGAGGATTTGGGTATTACTGACGATATGCTGCAGCCAGTGTCAATTGCCGATCAAGGAAAAACTTGGATTTGTCCCAAAAAAGAGTGCCATCGTTATTTCAATCGTCTTTATGCTCTCAAGAGTCATTTACTGACTCATTACGGAGTCAGACCATTCAAGTGCGACTTCGAGGGATGCTCCTGGGCCTTCTACTCCGAGTTCAAATTAAAACGACACCGAGAGACGCATTTGAAAAAGAAGGATTACGTTTGTGAGGAGGCCGATTGTCAACGGCGATTCACGACAATTTACAATCTCTGGAGTCACAAAAAATTGCACGAACGACCGAATAGAATAATTTGTCATGTGCCTGAGTGCGATGAGAAATTTCAAACGAAACGTGCGCTTGAAATTCACATGAAGTCACACGATCAAAGACACGCGCCATATCAATGTAAGCACGAGGGTTGTGGCAAGCGTTATTACAGCAGCAATGCCCTGTCGTCGCATCAACGTTGTCACAGTTACAAGGAGACGGACATCAAATGTTCATGGCCAGGTTGCGGCAAAGTTTTCGATAAACCCTGTCGTCTTAAGGCGCACACACGCTCTCACACCGGTTGCAAGCCCTATTCGTGCACATTTCCCGGTTGCCAATGGGCCTTCGCCTCCTCGAGTAAATTGAAACGACACCAAAAAAAGCACACGAACGACAGGAAGTTCGTTTGTGAAGTCGCGTCATGTGGAAAGGCTTTCATGCGATCGGAACATCTCAAAGAGCACAGATTAACCCATTCTTTGGAGAGATATTTCCAATGCTACGTGTGCAATTCGCGCTTCTCAGCGAAGAGCAGTCTCTACGTTCACATCAAGAAACACCACTCAAAGgtcgattcaagtaaattaataCCCCCAGGGATTCCAGGCGAGAGTCCACCTGGAGATTTTCTATCATCCGAAGCGAATCAAAATGATAATCTCGATCTCGAGACTGAATTACAAACGGAAATAATAAGTCGGGAAATTTTCGGCTCAACGGACACGACATTAATCGAGTCAAATGCAGAGGTAGTAAAAAATTCACTTCCATGTCCCGTGGAGACGTGCACAAGAAGTTACACGACAAAATCGTCGCTTCGCGCTCACGTGCAAAAAATGCACGGTTCGTCGATTCTCGAGGACGATGTCGCGAGAGTCGAGATACCGGAGAATGTCGCCGATTCAAATAATACCGATTTCATTGTGTACACACCCTATTCAATGTCGCAGCCGAATAATGATCAAATGATCATGGTCGCACCATGTGACGCCGTTGTTTTCAGCTCGTCGGAGAATAACGACATTCTCAATGAGACGGACAGTTTGAAAGTTGGCGGCGCTTCGGTGCTGAAgcgtaaaattgaaaatcaacgacgtaataataataatcagggTTCGGCGAGGACCGGTCTAACTTATGCGGACGTTTTTAAATTGAAGGAGCAAAATTCCGAGAGTGAGGAGACGGCCGTTGTTGGCGCACAGGACGTTATTTTGGGATCGTCCGATCTCGGTGAAGGTTTTCTCTTCACTGAGGACATACCCTCGATGTATTTTCAGGACGAGTGTCAGGTACTTTTACTAGATCCAGTCACTTCGGAGAATACAATCAATTTGCGTGATATCGTTTAA
Protein Sequence
MSRKGTTSVYSRSKQIPRIFQRQRTATNARSWLTSLIPEDGISLREQSVDQTHYDLIPGPSYDYYHVQQENEKKDVSSRSTTMVNKEFIEKTWNDESCQINEDSTGTQSMDSMERTGDANIEQWFKVRTDSVSNIDLEGMKNMPSYLADELSHNFLEKDSNSLSYDPILHELQNDKLLDTCTKDDEFILPEFALDPLELTPDMMVAGEILPSTSALNVSHDSCLPVQQQQQSDSLNTDHDLCDKATQCHTRDFDNTNLESLTKNVNNPENYLTELKSIDLNEFTDSEIEQKANYKTRDVNNMMKKISDMQVVLRDDAMVDQSDGVMAVVAISTDKISNLTQIVINNGTEEQIYQGKTSELIEATGNFSTIDAQNMWQGGGIENDSENMTINKHDILITSALEDLGITDDMLQPVSIADQGKTWICPKKECHRYFNRLYALKSHLLTHYGVRPFKCDFEGCSWAFYSEFKLKRHRETHLKKKDYVCEEADCQRRFTTIYNLWSHKKLHERPNRIICHVPECDEKFQTKRALEIHMKSHDQRHAPYQCKHEGCGKRYYSSNALSSHQRCHSYKETDIKCSWPGCGKVFDKPCRLKAHTRSHTGCKPYSCTFPGCQWAFASSSKLKRHQKKHTNDRKFVCEVASCGKAFMRSEHLKEHRLTHSLERYFQCYVCNSRFSAKSSLYVHIKKHHSKVDSSKLIPPGIPGESPPGDFLSSEANQNDNLDLETELQTEIISREIFGSTDTTLIESNAEVVKNSLPCPVETCTRSYTTKSSLRAHVQKMHGSSILEDDVARVEIPENVADSNNTDFIVYTPYSMSQPNNDQMIMVAPCDAVVFSSSENNDILNETDSLKVGGASVLKRKIENQRRNNNNQGSARTGLTYADVFKLKEQNSESEETAVVGAQDVILGSSDLGEGFLFTEDIPSMYFQDECQVLLLDPVTSENTINLRDIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00880706; iTF_00882420; iTF_00883269;
90% Identity
iTF_00882420;
80% Identity
-