Lsyp037250.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptopilina syphax
Gene Symbol
-
Assembly
GCA_032872505.1
Location
CM065476.1:6489641-6511111[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00054 0.1 14.4 4.1 1 23 225 247 225 247 0.97
2 11 1.7e-05 0.0032 19.1 1.5 1 23 253 275 253 275 0.98
3 11 0.0013 0.24 13.2 3.8 1 23 281 304 281 304 0.95
4 11 0.017 3.2 9.7 5.2 1 21 310 330 310 332 0.95
5 11 0.00017 0.032 16.0 1.9 1 23 338 360 338 360 0.99
6 11 2e-05 0.0039 18.9 0.4 1 23 366 388 366 388 0.98
7 11 0.00042 0.083 14.7 1.4 1 23 396 419 396 419 0.97
8 11 4.5e-05 0.0088 17.8 2.6 2 23 426 447 425 447 0.97
9 11 0.00017 0.032 16.0 0.3 1 23 453 475 453 475 0.99
10 11 0.0038 0.73 11.7 7.1 1 19 481 499 481 504 0.91
11 11 1.9e-07 3.6e-05 25.3 1.2 1 23 518 540 518 540 0.98

Sequence Information

Coding Sequence
ATGACAACTAACGTGACTACTATAAAATTGGAGGGTAATCAGGAAACCGTAACGGAAATACAAACTTACCTGGAAACCTTTAACAAGGAAATAGAAGGTGGCCAGGGTGAACAATTTCAACATGTCCAGttaCAACAAGTCGAAGGTCTTTCTGGTGGTGAAGAAGGTGGAACGTACTTCGTTGATCAGTCAGGACAATATTATTATCAAGCCAGCGGTGATGACACACCTGTAATGACCCAAGTTCAAATACAGGAAGTCGAGGATACTGAGGGACAAACTGAAGGCGACACTGCACCAGATGAACAATATCAAGAACTCGAAGAATTAGAACAAGTCGAAGGCGAAAATGGACAAGCGGTTAATGCAACGAACAATCAAGTCGTATTGAATTCAAACGATGCATATCAAACGGTGACAATTGTTCCCTCGGACACTAATCCAGGTGAAGTGAGCTATGTCCTCATAGTTCAGCAACCCGAGACTGATGAGAAACCAAAATGCGATAATGAGGCAGGAGAGGGCGAGGAGGGCGATGGTGAACAGGACCTCACTGTTTATGATTTCGAGGATAATGAGGACAATGACGCCGCAGTTGAATCCGAAACAGAGGATGATAAAACTAAAATAGTCAAATACATTCCCAGAAAGTCACAAACTGTTACACAAGCACACATGTGTAACTATTGCAATTACACAAGTCCTAAGAgATATCTTTTATCTCGACATATGAAATCTCATTCAGAGGAAAGACCACATAAATGTAGTGTGTGCGAAAGAGGTTTCAAGACTTTGGCATCACTTCAAAATCACGTTAATACACATACCGGGACCAAACCGCATCATTGCAAATTTTGTGACAGTGCATTTACAACGTCCGGTGAACTTGTAAGACATGTTCGGTACAGACACACTCATGAAAAGCCGCACAAATGTCACGAGTGTGATTACGCTTCTGTTGAACTGTCGAAACTAAAGCGACACATTCGTTGTCATACTGGAGAACGACCTTATCAGTGTCCACATTGTACTTACGCGAGTCCCGATACTTTCAAATTGAAGCGTCATTTACGAATTCACACTGGTGAGAAGCCATACGAGTGTGATATTTGTCAGGCGAGATTCACACAGTCTAATAGTTTGAAAGCCCACAAATTGGTTCATAATgTTGGTGACAAGCCGGTTTTTCAGTGTGAGCTTTGTCCGACAACGTGCGGACGTAAAACGGATCTTCGTATTCACGTGCAAAAATTACACACTTCGGACAAACCGTTAAAATGCAAACGCTGTGGAAAAACATTCCCCGACAGGTATAGTTACAAGCTTCACAGTAAAACACACGAGGGCGAGAAATGCTATAAATGTGATCTCTGTCCTTATGCATCAATATCAGCGCGTCACTTGGAGAGCCATATGCTTATTCATACAGATCAAAAGCCATATCAATGCGATCATTGTTATCAGTCATTCAGGCAAAAGCAACTCTTGAAACGACATTGCAATTTATATCACAATCCTTCTTATATTCCTCCGCCACCGCAGGAGAAAACGCATCAGTGCCCAGAATGCGAGAGACCATTCagGCATAAAGGTAATCTTATTCGCCATATGGCTGTGCATGATCCTGAGTCATCATTACAGGAGAAACAACAGGCCTTGAAAATGGGAAGGCAAAAGAAGATTCAAATTATTGACGGTCAACGAGTTGAAGTTATGACAGgtgATTTGGCTTCTAAATTAAGAGGGTATGAAGATGATGACGAAGAGGAAGAGGAAGAAGAGGAGGAGGAGTTGGAAGATGAGGAAATGATGGCCGTTGAAGGAACAGACGGTCAGCAATACGTTGTTCTAGAAGTTATTCAACTTGCCGATAATCAAGGAACAGATCagCAAATGGCTGTCGTGGCCAACGAGGACGGCGATATTGTAATGGAGGATCCTCTCAGTCAAGACAACAGCATTGTCGCCGACGTCTCTGGCGAATTAGATGCTGAGGAGGAAGACACTTCGTTAGGCGATTTGAAATTGCAACCACAACTTACGAGAAACAAATCTGAATCACAGTCTTCGCAACACGATCCGAAATTGCGCAAAGACATGGAAAATTGCTTTGGCTTCGATGAGGAAGAGGAAGATGAGGATGCAAACAGTGAGATGCAGTTATTAGATACCATATCTCTTGCAATTTGTAAATCGACTGAATGGTCAGGAGAGTTCGTTAAGACCCTTGGTGCTATTATCAGAAGAGCCGCACCCACTTATACAACCCTTGGTCATCAACCCCATGAAACTAACCATCCTCCTACCAACTCGTCTGGATGTCTATATGTATTTATAGAACATGCGATAGGAGTTTCTGTTGCATATAGAGATCTTAATCTCATAAAGGAGGGAATAGCTTGTCTGTGTGGATCTCCAAGTGAACACGACTCGTGCATAGTATTCGAACcggacgacgacgacgacgaagaCAACGACAAACGAATGCAGGGACAAATGGACTTGGCTCGTAGGACATATGCAGGGCCCACGCGACAATACTTCAAGTACCCGTGTGCAGCCTCCCACGGCCTCATCTCTTCTGCCCGGAGAACCATGCGGAGAACAAAGAATGAAGAACATTGCCCGTCTACTGGTAAGTCTCACGTTAAGCCTCTTAAGGAACTCTAG
Protein Sequence
MTTNVTTIKLEGNQETVTEIQTYLETFNKEIEGGQGEQFQHVQLQQVEGLSGGEEGGTYFVDQSGQYYYQASGDDTPVMTQVQIQEVEDTEGQTEGDTAPDEQYQELEELEQVEGENGQAVNATNNQVVLNSNDAYQTVTIVPSDTNPGEVSYVLIVQQPETDEKPKCDNEAGEGEEGDGEQDLTVYDFEDNEDNDAAVESETEDDKTKIVKYIPRKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHHCKFCDSAFTTSGELVRHVRYRHTHEKPHKCHECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICQARFTQSNSLKAHKLVHNVGDKPVFQCELCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKTFPDRYSYKLHSKTHEGEKCYKCDLCPYASISARHLESHMLIHTDQKPYQCDHCYQSFRQKQLLKRHCNLYHNPSYIPPPPQEKTHQCPECERPFRHKGNLIRHMAVHDPESSLQEKQQALKMGRQKKIQIIDGQRVEVMTGDLASKLRGYEDDDEEEEEEEEEELEDEEMMAVEGTDGQQYVVLEVIQLADNQGTDQQMAVVANEDGDIVMEDPLSQDNSIVADVSGELDAEEEDTSLGDLKLQPQLTRNKSESQSSQHDPKLRKDMENCFGFDEEEEDEDANSEMQLLDTISLAICKSTEWSGEFVKTLGAIIRRAAPTYTTLGHQPHETNHPPTNSSGCLYVFIEHAIGVSVAYRDLNLIKEGIACLCGSPSEHDSCIVFEPDDDDDEDNDKRMQGQMDLARRTYAGPTRQYFKYPCAASHGLISSARRTMRRTKNEEHCPSTGKSHVKPLKEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01001593;
90% Identity
iTF_00882407; iTF_00881485; iTF_00879942; iTF_00880688;
80% Identity
iTF_00882407;