Basic Information

Insect: Leptopilina syphax
Gene Symbol: PLAGL1
Assembly: GCA_032872505.1
Location: CM065471.1:6089084-6099960[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0024 0.46 12.4 0.2 2 23 298 319 297 319 0.96

2 11 0.0025 0.48 12.3 1.9 1 23 327 350 327 350 0.94

3 11 0.0046 0.9 11.4 4.3 1 23 387 409 387 409 0.98

4 11 6.1e-07 0.00012 23.6 1.8 2 23 449 470 448 470 0.97

5 11 1e-05 0.002 19.8 0.5 1 23 475 498 475 498 0.96

6 11 2.3e-06 0.00044 21.8 0.4 1 23 537 559 537 559 0.98

7 11 8.5e-07 0.00017 23.2 0.9 1 23 569 591 569 591 0.96

8 11 1.1e-06 0.00021 22.9 1.4 1 23 597 619 597 619 0.99

9 11 1.2e-05 0.0024 19.6 0.2 1 23 625 647 625 647 0.98

10 11 0.0021 0.41 12.5 4.2 1 23 653 675 653 675 0.98

11 11 0.002 0.39 12.6 0.2 1 21 681 701 681 702 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0024	0.46	12.4	0.2	2	23	298	319	297	319	0.96
2	11	0.0025	0.48	12.3	1.9	1	23	327	350	327	350	0.94
3	11	0.0046	0.9	11.4	4.3	1	23	387	409	387	409	0.98
4	11	6.1e-07	0.00012	23.6	1.8	2	23	449	470	448	470	0.97
5	11	1e-05	0.002	19.8	0.5	1	23	475	498	475	498	0.96
6	11	2.3e-06	0.00044	21.8	0.4	1	23	537	559	537	559	0.98
7	11	8.5e-07	0.00017	23.2	0.9	1	23	569	591	569	591	0.96
8	11	1.1e-06	0.00021	22.9	1.4	1	23	597	619	597	619	0.99
9	11	1.2e-05	0.0024	19.6	0.2	1	23	625	647	625	647	0.98
10	11	0.0021	0.41	12.5	4.2	1	23	653	675	653	675	0.98
11	11	0.002	0.39	12.6	0.2	1	21	681	701	681	702	0.94

Sequence Information

Coding Sequence: ATGGAACAGCAGAATAAAAgtgaaattacaaatttaagaAGTGAATTAGACAATTCGCATCAACAATGCAGAATTTGCTTAAAGTCGCACTCTTCTACCTGGGATTTATTTCGCGatggaaaaaatgttattcgcAAGTTGACTGCTTTCGCCAATGTACAgGTGGAAGAAGGTGACGGTTTACCTTCTATCGTCTGTCCAGATTGTCGACAACTTGTCGATATTGCCTACGATTTTAAATGCCAAGTTGAAAATTCTGATATGAAATTACGAAACACCTTTTTAACAAAAGATTCATTGTCTTTAACACATTCAATTAACAAAGTAATATCAGATGCAATAGCAGAtgaattttcacaaaaagtTATTTCGTGCAACGTAGAAAATCGCAGTCTACCACTTAATGATATAAGTTCAAAAATTGAACATTTCTCAGTGCATTCTAATGAGCAACTAGTTTCATCGCCTTTAAATAATTCGACAAACATAATAGCATTTAATATCGCTGGAAATTGCGCAGAGAAACACGAACCTGTAGCTGAAATAATTGacgaaaatttcatttatcaaGAAAGTGAAAAGTTAAATGTTTCCGAGACATTACAGGAAGAGAATTCATCGAGAGTTGATGGAAATATTCATCAGAACGCCGAAGGACATTTAGACATTgattttgaagaagaatatGTAAAAATAGAGGAAGCACAAAATCGACTGGAATTTACAAAtgataaaatcgaaaaaattccaTCAACATTTGAAGCCGTTAATAATGTCACAGAAAATTGTAATGATATTAATGATTTTAATGATCATCatcatgatgatgatgatgatgatgatgacgatgatAATGAAGAAATTCCATTAATATGCCGAACACAAAAACTAAAATGTCCcaaatgtataaaattattctccagTCGTACTGCATTGGAGAAACATGTTATTGTTCACAAATCGAAAACAAAATTACGCTATGTTTGTTATTTGtgtgaaaaacaattttcacatgTGGGAAAATTAAAAAGTCATTATCAAGACGTTCACGAGAAGAATAAAGACGATGAGAAAATAgaacaaaatgaaattaacgAAACGGAAAATGTGAAAAGAATCGATAAAGAAGGACATTCGTCAGAAAAGAAAGCCTTTAAATTTTCCTGCAAAGTTTGTTCAAAACAATTCACGTATCATAAATCATTTGTATCTCACGCTAAAATACATCCTGAATATAATACAgatgaattaattaatgaacCGTTACCAGCAAAAGATACGGAGGGCTCAACGAAATCTAAAGAGGTGGAATCAGATGACGAGGAAATGCTAACTGAAGGTTTACAATGTACAAAGTGTGGTAAACTATTTGCAACAAAGAGAAATCTCAAACGACATCTTCTGACTCATACTGGCTTGAAGTACAATTGTCCCATGTGTGGCAAGGAATTCTCCAGAGTCGATAAGCTGAAAGAACATGAACAATCGAAGCATAAGGATGAAATGTTTGGTGATCTGTCAGAAGATGGTTTCGATGATGGTACAGATAACGATAATAAATCATCAGATCTTCCAGAAAATAGAAAGAAGGAAAAATACAACAGACCGCATCAATGTAATCTTTGTCCAAAAGCTTTTGCTCAGCCACAATCTTTGGCGAACCATATGGAGCGTCACAAGCGTGTTAAAGACACGCAAAAGCGATTTTTGTGCGAGGTGTGTAGCAAATGTTTTGCACAAAGTGGTTCACTGGTAGCTCACATGCGTACACATACAGGCGTTAAACCATACGTTTGCAATGTTTGTACCAAAGCGTTTACAAAAAGTACGTATTTACAGCTACACTTACGAACTCACAGTGGAGAGAAGCCCTACATTTGTCAGTATTGCAGTAGGGCATTTGCGCGCGCCAACACTTTAGCGAGACACATAACAATGCATACGGGCGAAGCTAAATATCATTGTCAAATTTGCATGAAATCCTTCAGACGATTGACTTCCCTTAATGAACATACTTACACGCACACTGGTCAAAGACCTTATGCATGTAAAATATGCGCTAAACGATATAATAATGCCGGCTCGTTGTATGCCCATACGAAAAAATGTAAATCACAACAACAATCTAATATTGTCCCGACCTATCCAGTCAGTACTGAGCCGAcggaaaataatttgcaaaataatctTTCCTCCCCATcgaatcaattaatttcatcGTCACAAGTTTACTCCCAAAAGAAATTGATAGAAACCACAACGGTAACTCAACCTATTCCTGTACCTCAATTTATGATTGCTAATGTCCACAATCAAAAATCACTGACTAGCAATATCATTCAACCGTTTCCAGTCGAAGATCCGAATCTTTATGCCATGAGTACAAAACAGTTTAAAAATCCATACTATACAATTTATCCTAATATGTAA
Protein Sequence: MEQQNKSEITNLRSELDNSHQQCRICLKSHSSTWDLFRDGKNVIRKLTAFANVQVEEGDGLPSIVCPDCRQLVDIAYDFKCQVENSDMKLRNTFLTKDSLSLTHSINKVISDAIADEFSQKVISCNVENRSLPLNDISSKIEHFSVHSNEQLVSSPLNNSTNIIAFNIAGNCAEKHEPVAEIIDENFIYQESEKLNVSETLQEENSSRVDGNIHQNAEGHLDIDFEEEYVKIEEAQNRLEFTNDKIEKIPSTFEAVNNVTENCNDINDFNDHHHDDDDDDDDDDNEEIPLICRTQKLKCPKCIKLFSSRTALEKHVIVHKSKTKLRYVCYLCEKQFSHVGKLKSHYQDVHEKNKDDEKIEQNEINETENVKRIDKEGHSSEKKAFKFSCKVCSKQFTYHKSFVSHAKIHPEYNTDELINEPLPAKDTEGSTKSKEVESDDEEMLTEGLQCTKCGKLFATKRNLKRHLLTHTGLKYNCPMCGKEFSRVDKLKEHEQSKHKDEMFGDLSEDGFDDGTDNDNKSSDLPENRKKEKYNRPHQCNLCPKAFAQPQSLANHMERHKRVKDTQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCTKAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICMKSFRRLTSLNEHTYTHTGQRPYACKICAKRYNNAGSLYAHTKKCKSQQQSNIVPTYPVSTEPTENNLQNNLSSPSNQLISSSQVYSQKKLIETTTVTQPIPVPQFMIANVHNQKSLTSNIIQPFPVEDPNLYAMSTKQFKNPYYTIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00881483; iTF_00882415; iTF_00881497; iTF_00879923;
90% Identity: iTF_00881483;
80% Identity: -