Lsyp007506.1
Basic Information
- Insect
- Leptopilina syphax
- Gene Symbol
- -
- Assembly
- GCA_032872505.1
- Location
- CM065469.1:25390032-25399564[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 7.4e-06 0.0014 20.2 1.0 1 23 180 202 180 202 0.98 2 32 0.033 6.3 8.8 1.5 1 23 225 248 225 248 0.96 3 32 3.2e-05 0.0063 18.2 0.5 2 23 255 277 254 277 0.97 4 32 0.00017 0.032 16.0 1.0 1 21 297 317 297 318 0.95 5 32 0.093 18 7.3 0.7 3 23 417 437 415 437 0.96 6 32 0.15 30 6.7 0.1 1 23 443 466 443 466 0.94 7 32 0.00014 0.027 16.2 0.1 1 23 533 556 533 556 0.96 8 32 0.0095 1.8 10.5 0.4 1 23 562 585 562 585 0.96 9 32 0.14 28 6.8 1.5 1 23 598 620 598 620 0.97 10 32 4.2e-05 0.0082 17.9 0.9 3 23 664 685 663 685 0.96 11 32 0.53 1e+02 5.0 0.1 1 23 718 741 718 741 0.93 12 32 0.16 31 6.6 0.9 2 23 748 771 747 771 0.94 13 32 3.7 7.2e+02 2.3 0.0 2 23 780 802 780 802 0.84 14 32 0.3 59 5.7 0.0 2 23 809 831 808 831 0.92 15 32 1.5e-05 0.003 19.2 1.2 1 23 839 861 839 861 0.98 16 32 0.018 3.5 9.6 1.1 1 23 893 917 893 917 0.97 17 32 0.00025 0.048 15.4 3.3 1 23 920 943 920 943 0.97 18 32 0.05 9.8 8.2 0.5 2 23 950 972 949 972 0.95 19 32 0.0038 0.75 11.7 5.1 1 21 999 1019 999 1020 0.95 20 32 0.0032 0.62 11.9 1.8 2 23 1034 1055 1033 1056 0.93 21 32 0.34 66 5.6 2.7 1 23 1059 1081 1059 1082 0.95 22 32 0.039 7.5 8.5 3.1 2 23 1089 1112 1088 1112 0.93 23 32 3.6 7e+02 2.3 0.2 2 23 1120 1142 1120 1142 0.94 24 32 4.4 8.5e+02 2.1 0.0 2 23 1149 1171 1148 1171 0.87 25 32 0.27 52 5.9 2.7 2 23 1180 1202 1180 1202 0.96 26 32 0.35 67 5.5 0.9 2 23 1208 1230 1207 1230 0.93 27 32 3.6 6.9e+02 2.4 0.1 1 20 1328 1347 1328 1349 0.93 28 32 1.3 2.5e+02 3.7 1.1 1 20 1365 1384 1365 1386 0.94 29 32 0.38 74 5.4 1.9 2 23 1478 1500 1477 1500 0.94 30 32 0.42 82 5.3 0.3 2 23 1507 1529 1506 1529 0.94 31 32 0.2 39 6.3 1.8 1 23 1540 1562 1540 1562 0.97 32 32 0.043 8.4 8.4 0.6 3 20 1571 1588 1570 1589 0.94
Sequence Information
- Coding Sequence
- ATGatagCAGAGAATGATCGCCTACCAAAGTGTCTTTGCTATCGTTGCATgtacaatttagaaaatttttacgaCTTCAGGACAGCCTGCGTGAATGCAGTTGCTCTTTTAGAAAGGTGTCTACCTCAAGATAAAGatAGAAATGAAGAAAACAGAAGAAATCCACCAGCACATTATTCAGAACTGCGAACTGAACTTCTTAAGGAAAAACAACATATGCCAATACTCATTCCAGAAGCCCCCGTAGTTAATCCAAATGCAGCTTTAGGAACACCACCGAGACTTAATTCTGATGGCGAAGCAGATAATGACGATGAAGAAATTTTGGAGCAGAGCGGTACCGAAGAAGGAATGGATGATACAGAAGACAGAAAATCAGAGGAATACGAAATGGATATGGAAATGAATCCCAGTGATTTTTTGGAAATGACACCAATGGTTACAGAGGATGTGGAAGAAAATATAAGAGGTGGAGTTGTTTCCACACGAACGCAAAATTCAAGACCATCACATCATAAATCTGAGCAACACGAAGTTTATGTTTGTTCACTTTGTAACAAGGCATTCAGCTCGAAAGGTCATTTGTCACTTCACGCTAGAATACACGTTGGCGCAGGTGATGTAATCGGTGAAAAAGTTATCACCGACGATCACACTTCTTACAAAAGGCCCTATCAATGTGACTTGTGTTATAAGGCTTATTCAACTGCAAAACATCGATGGGGTCACGTTTCAACAACGCACAGAGGACATCCTGCGGTAACATGTAGTTACTGTTCGCGCATTTATTCAACGAGAGGAAATCTAGAAGAGCACATTAGGTCTAGACACGCTGGTTTGCCACTTCCGCCGGAACTGCCAGTTTCCTACGTTCAGCCGgaaaataaatatcaatgtaAAACATGTCCCAAGATGTATACGAATACTACGGACCTTAATAAACACAGTCGAATGTGTACAGGTGTTCAGCAAAAAGAATTgccaaataatttaataatagaaaagttGAAGAGAAGTCACATTGACACGTCAGACATGTCGAGTAATGAGTCAACTGACGAGTCGAAGGAATATAAAAATGCCGAGGCGAAACTTGCGAAAAATCCACAACTCACAATTCTCAAACAGGCACTTACCAAAGGAGACAACTTAAAGAGAAGTTATGACGAGAAATACAAGATTAATTCAAAATCGAAGAAACAAACAGGAACCGAGAATAGTGAGACTGATGTACAGAAACGATGGTTCTGTGAATCTTGTTCTCAGAATTTCAACTCTTTGGAGAGTTTCAAAGAACACGAACTCACGCATGAAATGGAGAAACcctatttttgtttactttgcGAGAAAGATTTTGCGCAGAAATCGATTTTGGGTAATCACATTGTTACGATTCATGGCGTTGATCCGAATCCGATTCTCGAGAGTGATAGATGTTTAAAGAAGTCTCAAGGCTGGAATAAAAAACAGGATTCAAACGGTAAGAATTTGACGATTAAAAGAGAGGAATCACCGATTACATATCCAGAAGCAGTTTTGGAGACTGATGACGATCAGCAACAGACGGAAACTAAAATGATTGAGATTGAAACAGTTTTTGTTTGTGAAATCTGTACCCGAGATTTCAATGACAGAGCTTCATTGTGGCTTCATATACGCGCAACTCACAAAGAATTTGCCGCTTTCGCTTGTGGTGTTTGTTTAAAAATCTGTTCTGACAATGCCCAATTACTGAATCATGTCAACATGTATCATGGTGGTTCGAAACTTCTCATGTCCGAGCAAAGGCGCTACAGTTGTACAATTTGTGGACGACAACACGATTCTCGCAAGAAGTTAATTACCCACGTGTCAATTCACAACGTTGATCCCAGCTACGACCCTGCAAGTTTCGTTCAACTAAACAGCAATTACTATAATGAGAATGTAAATAGCAACGAAGGCAACGAGCAAATTGATGGAGAGGTCGAGGATGGCGAGAAGGTCGACTGTTACATTTGCTACAAATCGTTTCCCAACGAAGATCATCTTATAAGACATCAACGAAACGCTCACAAATCCGATCCAGCCGTAGCAATTGGAGAATCTGCGTCAAATGGCAATGCTCCCGGACCCAATGGAAATGGAAACAGAGCACAATATCATTTGTTCTTCATTTGTGAACTCTGCGGAAGTTCATATCCGAGTAAATGGGAACGTTGGCTTCACGTTTCGAGTGTTCATGGAAATGAACCTTCGATAAAATGCGAAAGAGAAGATTGTGCGAAAATATTTGCCACTAAATCGTTGCGTAATGAACACGTTCAACATCACATGATTCAAGGCAGTTCGCCCAACACTTGTGAGATTTGCGGAAAATTGTGGGGCAGTCGAGTCGATTACTGGAAGCACGTGATGGGCGTTCATTCGGACACTGTGCCTCTAATTTGTGGAGTTTGCCTCAAAGTATTTCCCAACGTTCTGCAATTAAGTTCCCATGTTAAGGCAAATCACTGGCCGTTGACTAATGGCGATTTCAGTTGCGACATTTGTGGAAGACCTTATTCGAATAAGTCAAAAATGTCGAGACACAGAAAGATTCATGGTCTCGATGGCGATGGTCATGCTAATCCGGATCCTAGCGAGTATATGAATGACACGGGACGTTTCGATAATGGAGGAACAACTGAGGTCGATTTCAGTTGTGAAATGTGTGGAGATTTAAAGTTTGTGACACTCGAGGATCTCTGTAATCATAGAAGAATAACGCATAGTCTGTTCCCTTGTGATTTGTGCAACAAATGTTATGGAAGAACGTCACATTTGTGGAAGCATGTAAATCGTGTTCATAAAGGTCACGAGGACGTGACTTGTCGATTTTGTCTGAAAACCAGCGCCTCAAGAGAGCATTTAGCTGCACATATTGCGAAAATCCACAGATACGAACCTGAGGTGAAGAACAATGTGAGAGAACCAACAAATCATAAGGTCACTGTACCAGAGGACGAAATTCTCCATCACTGCGAGAAATGTAATAAAGGTTTCCATAAAAGGTATTTATTGCGACGCCACATGAAAGGTTGTCAGAATTATAGGAAAGATCCCGGAGCACTTTTGACCCGATGTCGTGCTTGCGAGAGAATATTCAAGGATCGAGCGAGTCTTCAAAAGCACATTGAGAATCATCACAGTAGTTACACTTGTCATTTGTGTAATGAAACAATCACTTCGAAATTGGCAATTATGACTCACAATCGAGTTCATCACATGGATCATCCGGATCTTACATGCGATCATAGTAATTGTAAGAAACTTTTCCGAACGAAAGAGGATCTTGAATCTCATAAAAAAGATCATAAATATCACAGTTCACCGAATGTTTGCGATTTCTGCGGCGACACGGTGGAAAATAAgctgaaattaaaaatgcaCGTGTTGTCATTGCATCGAAATGAAATTGGCGTCTCTTGTGGAGTTTGTTTAATTCCGATGAAAGATCCAAAGGATTTGAAGAAACACGTGGAGGACTCTCATAaggaaattctattaaaaccaAATACTTGTCAGGTTTGCGGTAAACAATATGCGTCAAAGTGGAAGGCTTTCGATCATACAAAGAAATGTCATGGAAAAGTTTTCAAGACTTGTAAACAATGTTTGGCTGTGTTCATAACTGAAGAAGACATGAAGAATCATTATGAGCACATTCATAATGTTCCTAAGGATCAATTAGCCACTTACGAGTATCGCTTGGAAATTGGACGCAAACGTCACTACGATTCGTTGGAAATTGTCATGAAAGAAGAACCAGAGGAACTTGAGTTCTACGAAGAACCTGCTGAAGATTATTCAATGGATTATAAGAGAAGAATATCTGAATCGGATTACGATTATGATGCTCGAGGTTATTATCAAAGGGAGCCGAATGATTTGGACGAGATGCATTTGGCAAAGAAGATGAAATTGGATCCAAGCGGTAAGAAGATGAAGGATCGTGAAAATTATGAATGTAGACCCTGTAAAGTTCAATTTGAAACAAAGGAACAATTTTACGATCATATTGTCGTTTGTCGTAATCTTACGATTGAACAGAAAATGAACGATCAAGAAAGTTATGTATGTAAGTCTTGCAATTCGCAATTTGATTCAAAAGAATTATATCATGAACATCTTTTCGTTTGCCGCTGTCTACCGGAAGTTCCCAGTTTTTCGACGTCAATTCTCGAGGCGCATTTGAAGAATAATAATCAAATCAAGAGAGAGGATGAAAATAATGAacttgatgaaaataatttaaatactccAGATTTCAATCTTTTTGAAGATATAAATATGCAACTGTCGGGCCAGAGACCAGTTCAGAATTTATCACTAAAGTCTTCCTCGAGTAGCAATAAATGTTCGAGAAAAGATTCAAGAAAGGTTTACGATGAATCGACGAATACTGAGTGTACTTGCGAGGTTTGTGGAAAACAATGGCCTGCGAAGAAACACTTGTGGCAACATTTGATTCGTTTTCATCGAACGGAAGCTGCAGTCACCTGTGGAGTTTGTCTAAAGTTGTGTAAGACGTATGAAGATTTGGCTGATCATTTAAAAGCCGCCCATCAAGCTCTCCTATCCTGCGAAGGTAATAATTTCACTTGTAAAATTTGCGGAAGATATCACAACGCAAGGAGCAAATTATTACTGCACATGAGCATTCATATCAATTGCAAGAATAATCCAATGTGCAACAAGTGTAAACGTAGTTTCGAAACTGACGAGAAATTGAAGGAGCACACTGGAAATTGTGAAGGTAGACAATCGGGTCTAGGTGTTCGGCATGACGCGGCAAATAAAGATGAGAAAgtcgaaaaagaagaaaaagaggcAGAATTTGGTTCCGAAGGTGAGGAGAAGGCTTCTGATAATGAAGAAAGCAGTTCTGACGATTCGGATGATTCAGAAACGGATAGTTCATCCAGTTCGAGTGATGAAGACGATGAAGAGGATGAAAATGACGATAATGAAAATGAAGATAATGGAACGGCACCTGAATCGAGAACAACAAGCAGACTTGGAGAATTGAGTTGCACAAGTGATAGTGAGGATGGTGATTCCGATAATTCAGAAGACTGTGAAAATGAAACAAGTGTAAAGTTAGAGGAAAAAGAAGcaataaaagaacaaaaagaTATTAGAAGAGTCAAAAAAGAATTGACGTTATCGGAGTCGGACACAAAAGACTCggctgtttttcaaaatttagaaatgaaacCAGAGAAAACATTGGATAGTATGGAATATTCTGATGACGAGGGACCACCAGTTTTGAGTCCCATGATGCCTTTGTTGCCTTCGCAAGAGGAGGATATGACTAGTCAGATTaacgaaatgaataaattaagtCCTATGGTGAATTTGGAAATGAAGATGAACGATTTGAAAAATCCGACAACTGATATGAATTTGACCGAGGCAGATCAAACGGAATCCGAAagcgatgatgatgatgaaaataaaatgtgcATCTACGAAGAAGCTGCACAACTTAAGGAGGAGAATTCGGCCCCAAATACAGACgaagaagatgatgatgataatgaagGAGAAGAGGTGGAGGAAGAAGTAGAAGAGGAAGAAATGGATTTTAAGAATGAAATAAATCAAGAAGTACTTGAAGAGAAAGGAACGCAGGATTCTGTCGAATCAGAGGAAGAAAGTAATAACGAAAATCTCGATGACGAAGCAggagaagaagaggaagaagcagaagaagaagaagaagaagaacctGAAGACGAAGTTGGAGAGGAAGAAGCAGAAGAGGAAGTTGGAGAGGAAGAAGCAGAAGAAGAAGCCGAAGAggaagaagtagaagaagagATGTACGAAGTTGAAAGCGAAAAGGAACATATAGTGAACGAAAATTGTTCAGCAGACGCAATGGAGCAATCAGAAATAATTGATGAGAATTTTGACGAAGCCGAGGGAGTAATACTGGAAGATGCAGATGAACTCCAAATGGAAAATAACGTCGAAATAGAAGGAGAATTAGGCGATAATAATTCTCTCATCGAGGAAGAAATTATAGGAGAGGAAAATTATGAAGACGAGACTAATATAGATGAAGATATTAACAATGAAGATCATTCCatgcagaatttaaataaaactattttaactGTTGGCAAGGATGACGATGGTAATCCTATTTTAATTCGTGAAGTAGTAACTCAATACGTTTATCAAGATGATTTTGACGGCGAATCTGAATATGTACAAGTTCCAGATGatcaaaatacatttttcaatgACGAAGAAGAAAATCAGAGAATGAGCGAAGAAACATTTGATGTTAACGATGATAATCTCGATCAAAATATTATTGAGACGAATATTTCAACTGGAGAAGAAGAAGTGGAGCATGAGGAGAATATagagaaggaaaaaataattgaaaataaaattgaaggtGAATGTGAAGAAGAGTCAAGAACGAGTGCCAAAAGTTAA
- Protein Sequence
- MIAENDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPQDKDRNEENRRNPPAHYSELRTELLKEKQHMPILIPEAPVVNPNAALGTPPRLNSDGEADNDDEEILEQSGTEEGMDDTEDRKSEEYEMDMEMNPSDFLEMTPMVTEDVEENIRGGVVSTRTQNSRPSHHKSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCYKAYSTAKHRWGHVSTTHRGHPAVTCSYCSRIYSTRGNLEEHIRSRHAGLPLPPELPVSYVQPENKYQCKTCPKMYTNTTDLNKHSRMCTGVQQKELPNNLIIEKLKRSHIDTSDMSSNESTDESKEYKNAEAKLAKNPQLTILKQALTKGDNLKRSYDEKYKINSKSKKQTGTENSETDVQKRWFCESCSQNFNSLESFKEHELTHEMEKPYFCLLCEKDFAQKSILGNHIVTIHGVDPNPILESDRCLKKSQGWNKKQDSNGKNLTIKREESPITYPEAVLETDDDQQQTETKMIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICSDNAQLLNHVNMYHGGSKLLMSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPSYDPASFVQLNSNYYNENVNSNEGNEQIDGEVEDGEKVDCYICYKSFPNEDHLIRHQRNAHKSDPAVAIGESASNGNAPGPNGNGNRAQYHLFFICELCGSSYPSKWERWLHVSSVHGNEPSIKCEREDCAKIFATKSLRNEHVQHHMIQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSSHVKANHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDGDGHANPDPSEYMNDTGRFDNGGTTEVDFSCEMCGDLKFVTLEDLCNHRRITHSLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRFCLKTSASREHLAAHIAKIHRYEPEVKNNVREPTNHKVTVPEDEILHHCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSSYTCHLCNETITSKLAIMTHNRVHHMDHPDLTCDHSNCKKLFRTKEDLESHKKDHKYHSSPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDSHKEILLKPNTCQVCGKQYASKWKAFDHTKKCHGKVFKTCKQCLAVFITEEDMKNHYEHIHNVPKDQLATYEYRLEIGRKRHYDSLEIVMKEEPEELEFYEEPAEDYSMDYKRRISESDYDYDARGYYQREPNDLDEMHLAKKMKLDPSGKKMKDRENYECRPCKVQFETKEQFYDHIVVCRNLTIEQKMNDQESYVCKSCNSQFDSKELYHEHLFVCRCLPEVPSFSTSILEAHLKNNNQIKREDENNELDENNLNTPDFNLFEDINMQLSGQRPVQNLSLKSSSSSNKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRTEAAVTCGVCLKLCKTYEDLADHLKAAHQALLSCEGNNFTCKICGRYHNARSKLLLHMSIHINCKNNPMCNKCKRSFETDEKLKEHTGNCEGRQSGLGVRHDAANKDEKVEKEEKEAEFGSEGEEKASDNEESSSDDSDDSETDSSSSSSDEDDEEDENDDNENEDNGTAPESRTTSRLGELSCTSDSEDGDSDNSEDCENETSVKLEEKEAIKEQKDIRRVKKELTLSESDTKDSAVFQNLEMKPEKTLDSMEYSDDEGPPVLSPMMPLLPSQEEDMTSQINEMNKLSPMVNLEMKMNDLKNPTTDMNLTEADQTESESDDDDENKMCIYEEAAQLKEENSAPNTDEEDDDDNEGEEVEEEVEEEEMDFKNEINQEVLEEKGTQDSVESEEESNNENLDDEAGEEEEEAEEEEEEEPEDEVGEEEAEEEVGEEEAEEEAEEEEVEEEMYEVESEKEHIVNENCSADAMEQSEIIDENFDEAEGVILEDADELQMENNVEIEGELGDNNSLIEEEIIGEENYEDETNIDEDINNEDHSMQNLNKTILTVGKDDDGNPILIREVVTQYVYQDDFDGESEYVQVPDDQNTFFNDEEENQRMSEETFDVNDDNLDQNIIETNISTGEEEVEHEENIEKEKIIENKIEGECEEESRTSAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00882388;
- 90% Identity
- iTF_00880671;
- 80% Identity
- -