Basic Information

Gene Symbol
-
Assembly
GCA_015476425.1
Location
JABAIE010000067.1:3920068-3931781[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 7.9e-06 0.0017 20.3 1.0 1 23 202 224 202 224 0.98
2 32 0.035 7.4 8.8 1.5 1 23 247 270 247 270 0.96
3 32 3.5e-05 0.0073 18.3 0.5 2 23 277 299 276 299 0.97
4 32 0.00018 0.038 16.0 1.0 1 21 319 339 319 340 0.95
5 32 0.099 21 7.4 0.7 3 23 439 459 437 459 0.96
6 32 0.16 34 6.7 0.1 1 23 465 488 465 488 0.94
7 32 0.00015 0.032 16.3 0.1 1 23 555 578 555 578 0.96
8 32 0.01 2.2 10.5 0.4 1 23 584 607 584 607 0.96
9 32 0.15 32 6.8 1.5 1 23 620 642 620 642 0.97
10 32 4.5e-05 0.0096 17.9 0.9 3 23 686 707 685 707 0.96
11 32 0.57 1.2e+02 5.0 0.1 1 23 740 763 740 763 0.93
12 32 0.17 37 6.6 0.9 2 23 770 793 769 793 0.94
13 32 4 8.4e+02 2.3 0.0 2 23 802 824 802 824 0.84
14 32 0.32 68 5.8 0.0 2 23 831 853 830 853 0.92
15 32 1.7e-05 0.0035 19.3 1.2 1 23 861 883 861 883 0.98
16 32 0.019 4.1 9.6 1.1 1 23 915 939 915 939 0.97
17 32 0.00027 0.056 15.5 3.3 1 23 942 965 942 965 0.97
18 32 0.054 11 8.2 0.5 2 23 972 994 971 994 0.95
19 32 0.0041 0.87 11.7 5.1 1 21 1021 1041 1021 1042 0.95
20 32 0.0034 0.72 12.0 1.8 2 23 1056 1077 1055 1078 0.93
21 32 0.36 77 5.6 2.7 1 23 1081 1103 1081 1104 0.95
22 32 0.041 8.8 8.6 3.1 2 23 1111 1134 1110 1134 0.93
23 32 3.9 8.2e+02 2.4 0.2 2 23 1142 1164 1142 1164 0.94
24 32 4.7 9.9e+02 2.1 0.0 2 23 1171 1193 1170 1193 0.87
25 32 0.29 61 5.9 2.7 2 23 1202 1224 1202 1224 0.96
26 32 0.37 78 5.6 0.9 2 23 1230 1252 1229 1252 0.93
27 32 3.8 8.1e+02 2.4 0.1 1 20 1350 1369 1350 1371 0.93
28 32 1.4 2.9e+02 3.8 1.1 1 20 1387 1406 1387 1408 0.94
29 32 0.41 86 5.5 1.9 2 23 1500 1522 1499 1522 0.94
30 32 0.45 95 5.3 0.3 2 23 1529 1551 1528 1551 0.94
31 32 0.22 45 6.3 1.8 1 23 1562 1584 1562 1584 0.97
32 32 0.046 9.8 8.4 0.6 3 20 1593 1610 1592 1611 0.94

Sequence Information

Coding Sequence
ATGCTCTCTGTTCTTCCATTCTGCCAGGCCAGGCCAGGCCTCGCCTCGCCTTCAAATTCAACATCGCCAATAGCAGAGAATGATCGCCTACCAAAGTGTCTTTGCTATCGTTGCATGTACAATTTAGAAAATTTTTACGACTTCAGGACAGCCTGCGTGAATGCAGTTGCTCTTTTAGAAAGGTGTCTACCTCAAGATAAAGATAGAAATGAAGAAAACAGAAGAAATCCACCAGAACATTATTCAGAACTGCGAACTGAACTTCTTAAGGAAAAACAACATATGCCAATACTCATTCCAGAAGCCCCCGTAGTTAATCCAAATGCAGCTTTAGGAACACCACCGAGACTTAATTCCGATGGCGAAGCAGATAATGACGATGAAGAAATTTTGGAGCAGAGCGGTACCGAAGAAGGAATGGATGATGCAGAAGACAGAAAATCAGAGGAATACGAAATGGATATGGAAATGAATCCCAGTGATTTTTTGGAAATGACACCAATGGTTACAGAGGATGTGGAAGAAAATATAAGAGGTGGAGTTGTTTCCACACGAACGCAAAATTCAAGACCATCACATCATAAATCTGAGCAACACGAAGTTTATGTTTGTTCACTTTGTAACAAGGCATTCAGCTCGAAAGGTCATTTGTCACTTCACGCTAGAATACACGTTGGCGCAGGTGATGTAATCGGTGAAAAAGTTATCACCGACGATCACACTTCTTACAAAAGGCCCTATCAATGTGACTTGTGTTATAAGGCTTATTCAACTGCAAAACATCGATGGGGTCACGTTTCAACAACGCACAGAGGACATCCTGCGGTAACATGTAGTTACTGTTCGCGCATTTATTCAACGAGAGGAAATCTAGAAGAGCACATTAGGTCTAGACACGCTGGTTTGCCACTTCCGCCGGAACTGCCAGTTTCCTACGTTCAGCCGGAAAATAAATATCAATGTAAAACATGTCCCAAGATGTATACGAATACTACGGACCTTAATAAACACAGTCGAATGTGTGCAGGTGTTCAGCAAAAAGAATTGCCAAATAATTTAATAATAGAAAAGTTGAAGAGAAGTCACATTGACACGTCAGACATGTCGAGTAATGAGTCAACTGACGAGTCGAAGGAATATAAAAATGCCGAGGCGAAACTTGCGAAAAATCCACAACTCACAATTCTCAAACAGGCACTTACCAAAGGAGACAACTTAAAGAGAAGTTATGACGAGAAATACAAGATTAATTCAAAATCGAAGAAACAAACAGGAACCGAGAATAGTGAGACTGATGTACAGAAACGATGGTTCTGCGAATCTTGTTCTCAGAATTTCAACTCTTTGGAGAGTTTCAAAGAACACGAACTCACGCATGAAATGGAGAAACCCTATTTTTGTTTACTTTGCGAGAAAGATTTTGCGCAGAAATCGATTTTGGGTAATCACATTGTTACGATTCATGGCGTTGATCCGAATCCGATTCTCGAGAGTGATAGATGTTTAAAGAAGTCTCAAGGCTGGAATAAAAAACAGGATTCAAACGGTAAGAATTTGACGATTAAAAGAGAGGAATCACCGATTACATATCCAGAAGCAGTTTTGGAGAATGATGACGATCAGCAACAGACGGAAACTAAAATGATTGAGATTGAAACAGTTTTTGTTTGTGAAATCTGTACCCGAGATTTCAATGACAGAGCTTCATTGTGGCTTCATATACGCGCAACTCACAAAGAATTTGCCGCTTTCGCTTGTGGTGTTTGTTTAAAAATCTGTTCTGACAATGCCCAATTACTGAATCATGTCAACATGTATCATGGTGGTTCGAAACTTCTCATGTCCGAGCAAAGGCGCTACAGTTGTACAATTTGTGGACGACAACACGATTCTCGCAAGAAGTTAATTACCCACGTGTCAATTCACAACGTTGATCCCAGCTACGACCCTGCAAGTTTCGTTCAACTAAACAGCAATTACTATAATGAGAATGTAAATAGCAACGAAGGCAACGAGCAGATTGATGGAGAGGTCGAGGATGGCGAGAAGGTCGACTGTTACATTTGCTACAAATCGTTTCCCAACGAAGATCATCTTATAAGACATCAACGAAACGCTCACAAATCCGATCCAGCCGTAGCAATTGGAGAATCTGCGTCAAATGGCAATGCTCCCGGACCCAATGGAAATGGAAACAGAGCACAATATCATTTGTTCTTCATTTGTGAACTCTGCGGAAGTTCATATCCGAGTAAATGGGAACGTTGGCTTCACGTTTCGAGTGTTCATGGAAATGAATCTTCGATAAAATGCGAAAGAGAAGATTGTGCGAAAATATTTGCCACTAAATCGTTGCGTAATGAACACGTTCAACATCACATGATTCAAGGCAGTTCGCCCAACACTTGTGAGATTTGCGGAAAATTGTGGGGCAGTCGAGTCGATTACTGGAAGCACGTGATGGGCGTTCATTCGGACACTGTGCCTCTAATTTGTGGAGTTTGCCTCAAAGTATTTCCCAACGTTCTGCAATTAAGTTCCCATGTTAAGGCAAATCACTGGCCGTTGACTAATGGCGATTTCAGTTGCGACATTTGTGGAAGACCTTATTCGAATAAGTCAAAAATGTCGAGACACAGAAAGATTCATGGTCTCGATGGCGATGGTCATGCTAATCCGGATCCTAGCGAGTATATGAATGACACGGGACGTTTCGATAATGGAGGAACAACTGAGGTCGATTTCAGTTGTGAAATGTGTGGAGATTTAAAGTTTGTGACACTGGAGGATCTCTGTAATCATAGAAGAATAACGCATAGTCTGTTCCCTTGTGATTTGTGCAACAAATGTTATGGAAGAACGTCACATTTGTGGAAGCATGTAAATCGTGTTCATAAAGGTCACGAGGACGTGACTTGTCGATTTTGTCTGAAAACCAGCGCCTCAAGGGAGCATTTAGCAGCACATATTGCGAAAATCCACAGATACGAACCTGAGGTGAAGAACAATGTGAGAGAACCAACAAATCATAAGGTCACTGCACCAGAGGACGAAATTCTCCATCACTGCGAGAAATGTAATAAAGGTTTCCATAAAAGGTATTTATTGCGACGCCACATGAAAGGTTGTCAGAATTATAGGAAAGATCCCGGAGCACTTTTGACCCGATGTCGTGCTTGCGAGAGAATATTCAAGGATCGAGCGAGTCTTCAAAAGCACATTGAGAATCATCACAGTAGTTACACTTGTCATTTGTGTAATGAAACAATCACTTCGAAATTGGCAATTATGACTCACAATCGAGTTCATCACATGGATCATCCGGATCTTACATGCGATCATAGTAATTGTAAGAAACTTTTCCGAACGAAAGAGGATCTTGAATCTCATAAAAAAGATCATAAATATCACAGTTCACCGAATGTTTGCGATTTCTGCGGCGACACGGTGGAAAATAAGCTGAAATTAAAAATGCACGTGTTGTCATTGCATCGAAATGAAATTGGCGTCTCTTGTGGAGTTTGTTTAATTCCGATGAAAGATCCAAAGGATTTGAAGAAACACGTCGAGGACTCTCATAAGGAAATTCTATTAAAACCAAATACTTGTCAGGTTTGCGGTAAACAATATGCGTCAAAGTGGAAGGCTTTCGATCATACAAAGAAATGTCATGGAAAAGTTTTCAAGACTTGTAAACAATGTTTGGCTGTGTTCATAACTGAAGAAGATATGAAGAATCATTATGAGCACATTCATAATGTTCCTAAGGATCAATTAGCCACTTACGAGTATCGCTTGGAAATTGGACGCAAACGTCACTACGATTCGTTGGAAATTGTCATGAAAGAAGAACCAGAGGAACTTGAGTTCTACGAAGAACCTGCTGAAGATTATTCAATGGATTATAAGAGAAGAATATCTGAATCGGATTACGATTATGATGCTCGAGGTTATTATCAAAGGGAGCCGAATGATTTGGACGAGATGCATTTGGCAAAGAAGATGAAATTGGATCCAAGCGGTAAGAAGATGAAGGATCGTGAAAATTATGAATGTAGACCCTGTAAAGTTCAATTTGAAACAAAGGAACAATTTTACGATCATATTGTCGTTTGTCGTAATCTTACGATTGAACAGAAAATGAACGATCAAGAAAGCTATGTATGTAAGTCTTGCAATTCGCAATTTGATTCAAAAGAATTATATCATGAACATCTTTTCGTTTGCCGCTGTCTACCGGAAGTTCCCAGTTTTTCGACGTCAATTCTCGAGGCGCATTTGAAGAATAATAATCAAATCAAGAGAGAGGATGAAAATAATGAACTTGATGAGAATAATTTAAATACTCCAGATTTCAATCTTTTTGAAGATATAAATATGCAACTGTCGGGCCAGAGACCAGTTCAGAATTTATCACTAAAGTCTTCCTCGAGTAGCAATAAATGTTCGAGAAAAGATTCAAGAAAGGTTTACGATGAATCGACGAATACTGAGTGTACTTGCGAGGTTTGTGGAAAACAATGGCCTGCGAAGAAACACTTGTGGCAACATTTGATTCGTTTTCATCGAACGGAAGCTGCAGTCACCTGTGGAGTTTGTCTAAAGTTGTGTAAGACGTATGAAGATTTGGCTGATCATTTAAAAGCCGCCCATCAAGCTCTCCTATCCTGCGAAGGTAATAATTTCACTTGTAAAATTTGCGGAAGATATCACAACGCAAGGAGCAAATTATTACTGCACATGAGCATTCATATCAATTGCAAGAATAATCCAATGTGCAACAAGTGTAAACGTAGTTTCGAAACTGACGAGAAATTGAAGGAGCACACTGGAAATTGTGAAGGTAGACAATCGGGTCTAGGTGTTCGGCATGACGCGGCAAATAAAGATGAGAAAGTCGAAAAAGAAGAAAAAGAGGCAGAATTTGGTTCCGAAGGTGAGGAGAAGGCTTCTGATAATGAAGAAAGCAGTTCTGACGATTCGGATGATTCAGAAACGGATAGTTCATCCAGTTCGAGTGATGAAGACGATGAAGAGGATGAAAATGACGATAATGAAAATGAAGATAATGGAACGGCACCTGAATCGAGAACAACAAGCAGACTTGGAGAATTGAGTTGCACAAGTGATAGTGAGGATGGTGATTCCGATAATTCAGAAGACTGTGAAAATGAAACAAGTGTAAAGTTAGAGGAAAAAGAAACAATAAAAGAACAAAAAGATATTAGAAGAGTCAAAAAAGAATTGACGTTATCGGAGTCGGACACAAAGGACTCGGCTGTTTTTGAAAATTTAGAAATGAAACCAGAGAAAACATTGGATAGTATGGAATATTCTGATGACGAGGGACCACCAGTTTTGAGTCCCATGATGCCTTTGTTGCCTTCGCAAGAGGAGGATATGACTAGTCAGATTAACGAAATGAATAAATTAAGTCCTATGGTGAATTTGGAAATGAAGATGAACGATTTGAAAAATCCGACAACTGATATGAATTTGACCGAGGCAGATCAAACGGAATCCGAAAGCGATGATGATGAAAATAAAATGTGCATCTACGAAGAAGCTGCGCAACTTAAGGAGGAGAATTCGGCCCCAAATACAGACGAAGAAGATGATGATGATAATGAAGGAGAAGAGGTGGAGGAAGAAGTAGAAGAGGAAGAAATGGATTTTAAGAATGAAATAAATCAAGAAGTACTTGAAGAGAAAGGAACGCAGGATTCTGTCGAATCAGAGGAAGAAAACGCAATGGAGCAATCAGAAATAATTGATGAGAATTTTGACGAAGCCGAGGGAGTAATACTGGAAGACGCAGATGAACTCCAAATGGAAAATAACGTCGAAATAGAAGGAGAATTAGGCGATAATAATTCTCTCATCGAGGAAGAAATTATAGGAGAGGAAAATTATGAAGACGAGACTAATATAGATGAGGATATTAACAATGAAGATCATTCCATGCAGAATTTAAATAAAACCATTTTAACTGTTGGCAAGGATGACGATGGTAATCCTATTTTAATTCGTGAAGTAGTAACTCAATACGTTTATCAAGATGATTTTGACGGCGAATCTGAATATGTACAAGTTCCAGATGATCAAAATACATTTTTCAATGACGAAGAAGAAAATCAGAGAATGAGCGAAGAAACATTTGATGTTAACGATGATAATCTCGATCAAAATATTATTGAGACGAATATTTCAACTGGAGAAGAAGAAGTGGAGCATGAGGAGAATATAGAGAAGGAAAAAATAATTGAAAATAAAATTGAAGGTGAATGTGAAGAAGAGTCAAGAACGAGTGCCAAAAGTTAA
Protein Sequence
MLSVLPFCQARPGLASPSNSTSPIAENDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPQDKDRNEENRRNPPEHYSELRTELLKEKQHMPILIPEAPVVNPNAALGTPPRLNSDGEADNDDEEILEQSGTEEGMDDAEDRKSEEYEMDMEMNPSDFLEMTPMVTEDVEENIRGGVVSTRTQNSRPSHHKSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCYKAYSTAKHRWGHVSTTHRGHPAVTCSYCSRIYSTRGNLEEHIRSRHAGLPLPPELPVSYVQPENKYQCKTCPKMYTNTTDLNKHSRMCAGVQQKELPNNLIIEKLKRSHIDTSDMSSNESTDESKEYKNAEAKLAKNPQLTILKQALTKGDNLKRSYDEKYKINSKSKKQTGTENSETDVQKRWFCESCSQNFNSLESFKEHELTHEMEKPYFCLLCEKDFAQKSILGNHIVTIHGVDPNPILESDRCLKKSQGWNKKQDSNGKNLTIKREESPITYPEAVLENDDDQQQTETKMIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICSDNAQLLNHVNMYHGGSKLLMSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPSYDPASFVQLNSNYYNENVNSNEGNEQIDGEVEDGEKVDCYICYKSFPNEDHLIRHQRNAHKSDPAVAIGESASNGNAPGPNGNGNRAQYHLFFICELCGSSYPSKWERWLHVSSVHGNESSIKCEREDCAKIFATKSLRNEHVQHHMIQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSSHVKANHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDGDGHANPDPSEYMNDTGRFDNGGTTEVDFSCEMCGDLKFVTLEDLCNHRRITHSLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRFCLKTSASREHLAAHIAKIHRYEPEVKNNVREPTNHKVTAPEDEILHHCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSSYTCHLCNETITSKLAIMTHNRVHHMDHPDLTCDHSNCKKLFRTKEDLESHKKDHKYHSSPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDSHKEILLKPNTCQVCGKQYASKWKAFDHTKKCHGKVFKTCKQCLAVFITEEDMKNHYEHIHNVPKDQLATYEYRLEIGRKRHYDSLEIVMKEEPEELEFYEEPAEDYSMDYKRRISESDYDYDARGYYQREPNDLDEMHLAKKMKLDPSGKKMKDRENYECRPCKVQFETKEQFYDHIVVCRNLTIEQKMNDQESYVCKSCNSQFDSKELYHEHLFVCRCLPEVPSFSTSILEAHLKNNNQIKREDENNELDENNLNTPDFNLFEDINMQLSGQRPVQNLSLKSSSSSNKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRTEAAVTCGVCLKLCKTYEDLADHLKAAHQALLSCEGNNFTCKICGRYHNARSKLLLHMSIHINCKNNPMCNKCKRSFETDEKLKEHTGNCEGRQSGLGVRHDAANKDEKVEKEEKEAEFGSEGEEKASDNEESSSDDSDDSETDSSSSSSDEDDEEDENDDNENEDNGTAPESRTTSRLGELSCTSDSEDGDSDNSEDCENETSVKLEEKETIKEQKDIRRVKKELTLSESDTKDSAVFENLEMKPEKTLDSMEYSDDEGPPVLSPMMPLLPSQEEDMTSQINEMNKLSPMVNLEMKMNDLKNPTTDMNLTEADQTESESDDDENKMCIYEEAAQLKEENSAPNTDEEDDDDNEGEEVEEEVEEEEMDFKNEINQEVLEEKGTQDSVESEEENAMEQSEIIDENFDEAEGVILEDADELQMENNVEIEGELGDNNSLIEEEIIGEENYEDETNIDEDINNEDHSMQNLNKTILTVGKDDDGNPILIREVVTQYVYQDDFDGESEYVQVPDDQNTFFNDEEENQRMSEETFDVNDDNLDQNIIETNISTGEEEVEHEENIEKEKIIENKIEGECEEESRTSAKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00883241;
90% Identity
iTF_00880671;
80% Identity
-