Lsyp012480.1
Basic Information
- Insect
- Leptopilina syphax
- Gene Symbol
- -
- Assembly
- GCA_032872505.1
- Location
- CM065470.1:47301842-47306361[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.85 1.7e+02 4.3 0.5 2 23 93 114 92 114 0.95 2 13 8.7e-05 0.017 16.9 0.9 3 23 120 140 119 140 0.97 3 13 0.011 2.2 10.2 2.3 1 23 246 268 246 268 0.90 4 13 2.5e-06 0.00048 21.7 2.3 1 23 293 315 293 315 0.98 5 13 3.6e-05 0.007 18.1 1.7 1 23 321 343 321 343 0.95 6 13 3.3e-05 0.0063 18.2 0.6 1 23 349 371 349 371 0.98 7 13 1.6e-05 0.0031 19.2 4.8 1 23 377 399 377 399 0.96 8 13 4.9e-07 9.5e-05 23.9 1.2 1 23 404 426 404 426 0.96 9 13 0.00012 0.023 16.5 0.8 1 23 432 454 432 454 0.97 10 13 3.9e-06 0.00076 21.1 5.0 1 23 460 482 460 482 0.98 11 13 1.3e-06 0.00025 22.6 1.3 1 23 488 510 488 510 0.98 12 13 9.9e-07 0.00019 23.0 0.7 1 23 516 538 516 538 0.99 13 13 8.8e-06 0.0017 20.0 1.6 3 23 546 567 545 567 0.97
Sequence Information
- Coding Sequence
- ATGGAGGACTCAGTAATGCTTGAGAAGGCGCTCTTGTCTATTGAGAGCCATGATATGGATTTCTCAGTAGTTGAAATGGAAAAACTGGATTTGGACAATGAAAATGTGCATCAACATTGGGAAACAGATGCAAGTCTCTGCGATAAAGATGACACCAGTCTTCAACGATGCTTCATCAATGCCATTACTTTTGATTCGATACATCAAGAACAAATCGCCGAGAAATCACCACCTTTGCCAATAAATAATTTCCCACAGAcgaaattctacaaaattcaatgcTTCATTTGTCAAAAGTGGTTTCTAAACAATGACACAATGGTGACACATTTAAAACTCCATTGCAGTGGAAATAATTGTCAAGTATGTGATCAAAATTTTCCCGACTCCGAAACACTCTGTACGCATATGTTAATTCACATTGGAATGAATTTCACCGAGAAAACGTTCCCCGATAggttaattttagaaaatcagtTACATTCACATTCTAATGATGGTGAAGAAAGAGAAGAACGTGAAGAAAGAAGAGAAGAAAGTGAAGAAAGAGGGGAAGGTGAAGAAAGAGGTTATGGTGAAGAAAGAGGTGATGGTGAAGAAAGAGGCAAAGGTGAAGAAAGAGGTGAAGGTGAAGAAAAAGCAGAAAGAGAAGAAACAGAAGGAAGAGAAAGAGCAGAAGGAACAGTGGGATTTCAAGGGCAATTCGAAGTGAACGAAAACATCAAGtgtgataattatttttgtgatatTTGTCAGGAGTCGTTTCAAGAAAGGGACGATTTCAACCGACATTGTTTGATTCATGGGAGCTTTAACGAAGGGGAGAAATTCGAGTCCGAGTTGagccatcatcatcatcaacgCAGGACGAAGCAATTCAAGTGTACACTTTGTCAGAGATGCTTCGCGCAAAGAGCCGCTCTAAACAACCACATGTTGTCGCACACCCGAGACAAGCCGCACGCTTGCAGTGTCTGCGCGAAGACATACAAAAGAAAGTCCGAACTCATGAGGCACTCGATGGTCCACACAGGCGAGCGGCCCTACGAGTGCAAAGAGTGCCTGATGACATTCCGCGAGAAGGCAAAGCTGAATTCGCACATGCTGGTCCACACCGGCGAGAAGCCGCACGCCTGCCACATTTGCCAGAAGGCTTGCGCGAGAAAGTCCGATCTAACTAGTCACATGCTCTCGCACACTGGCGGCCAATACGACTGTCACGTTTGCGAGAAGATTTTCACCCGCAAGTCAGACTTGAATCGACACGCTTTAATTCACACGGGCGAGAAGCCGTTCGCCTGTGAACATTGTGATATGGCTTTTAGGGAGAAGACGCGACTGAATTCGCACATCCTCGTGCACACTGGCGACAGGCGGCACGTGTGTCACATTTGCCAGAAGTCCTTCAAGGAGAAGGCCACGCTGAAGAAGCACTTGCTGACCCACATGGGCGAGCGGTCCTACGAATGCTACGTCTGCCAAAAAACATTCACTCAGAAGACAACGTTGAACAGTCACATTTTAATCCACGACGACGTGTCGTCTTATGAGTGCAGCACTTGTCAGGAGGTATTTAACGATAGAGGTCAGTTGAAGAAGCATTTATTGACGCACACGGGGAATAAATTTAACGACTGTCCGATTTGTTTGAAGAAATTTACGCACAGATCGGCGCTGAATAATCATATTTCCACTTCGCACAGATCCTGA
- Protein Sequence
- MEDSVMLEKALLSIESHDMDFSVVEMEKLDLDNENVHQHWETDASLCDKDDTSLQRCFINAITFDSIHQEQIAEKSPPLPINNFPQTKFYKIQCFICQKWFLNNDTMVTHLKLHCSGNNCQVCDQNFPDSETLCTHMLIHIGMNFTEKTFPDRLILENQLHSHSNDGEEREEREERREESEERGEGEERGYGEERGDGEERGKGEERGEGEEKAEREETEGRERAEGTVGFQGQFEVNENIKCDNYFCDICQESFQERDDFNRHCLIHGSFNEGEKFESELSHHHHQRRTKQFKCTLCQRCFAQRAALNNHMLSHTRDKPHACSVCAKTYKRKSELMRHSMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHACHICQKACARKSDLTSHMLSHTGGQYDCHVCEKIFTRKSDLNRHALIHTGEKPFACEHCDMAFREKTRLNSHILVHTGDRRHVCHICQKSFKEKATLKKHLLTHMGERSYECYVCQKTFTQKTTLNSHILIHDDVSSYECSTCQEVFNDRGQLKKHLLTHTGNKFNDCPICLKKFTHRSALNNHISTSHRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00881463;
- 90% Identity
- iTF_00882381; iTF_00881463;
- 80% Identity
- -