Ldro000302.1
Basic Information
- Insect
- Leptopilina drosophilae
- Gene Symbol
- -
- Assembly
- GCA_032873175.1
- Location
- CM065478.1:6040280-6044550[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.8 1.6e+02 4.3 0.5 2 23 94 115 93 115 0.95 2 13 8.9e-05 0.018 16.8 0.8 3 23 121 141 120 141 0.97 3 13 0.0042 0.85 11.5 2.0 1 23 239 261 239 261 0.90 4 13 2.3e-06 0.00047 21.7 2.3 1 23 287 309 287 309 0.98 5 13 3.4e-05 0.0068 18.1 1.7 1 23 315 337 315 337 0.95 6 13 3.1e-05 0.0062 18.2 0.6 1 23 343 365 343 365 0.98 7 13 1.5e-05 0.0031 19.2 4.8 1 23 371 393 371 393 0.96 8 13 1.1e-06 0.00023 22.7 1.9 1 23 398 420 398 420 0.96 9 13 0.00011 0.022 16.5 0.8 1 23 426 448 426 448 0.97 10 13 8.5e-06 0.0017 20.0 6.2 1 23 454 476 454 476 0.98 11 13 1.2e-06 0.00024 22.7 1.3 1 23 482 504 482 504 0.98 12 13 1.4e-06 0.00029 22.4 0.7 1 23 510 532 510 532 0.99 13 13 8.3e-06 0.0017 20.0 1.6 3 23 540 561 539 561 0.97
Sequence Information
- Coding Sequence
- ATGGAGGACTCAGTAATGCTTGAGAAGGCGCTCTTGTCGATTGAGAGCCATGATATGGATTTCTCAGTTGTTGAAAtgGAAAAACTGGATTTGGACAACGAAAACGTGCATCACCAACATTGGGAAACTGATGCGAATCTCTGCGATAAAGATGAGACCAGTCTTCAACGATGCTTCATCAATGCCATTAGTTTCGATTCAATAAGTCAAGAGCAACTCGTCGAGAAATCACCACCTTTGCCAATAAACAATTTCCAACAGACGAagttctacaaaattcaatgcTTCATTTGCCAAAAGTGGTTTCTAAACAATGACACAATGGTGACACATTTAAAGCTCCATTGCAGTGGAAATAATTGTCAAGTGTGTGATCAAAATTTTCCCGACTCCGAAACACTCTGTTCGCATATGTTGATTCACATTGGAATGAATTACACCCAGAAAACGTCGTTTTCCGATAGattaattttagataatcagTTACATTTACATTCTAATGATGGGGTAGAAGATGAAGAAAGAGGTGAAGGTGAAGAAAGAGGTGGAGGTGAAGAAAGAAGTAGAGGCAAAGAAAGAGGTGAAGAAAGAGGTGGAGGTGAAGAAAGAGGTAGAGGTGAAGAAAGAAAGGAAGGCGAAGGAGAAGAAACAGAAGGAACAGTGGGATTTCAAGAGCAATTCGAAGTGAGCGAAAACATTTCCAAGTGTGATAGTTATTTTTGTGATATTTGTCAGGAGTCGTTTGGAGAAAGAAGCGACTTCAATCGACATTGTTTGATTCATGGCAGCTTTGGCGAAAGGGAGAAATTCGAGTCTGAAGTGCGTCATCATCTTCATCATCAGCGCAGGACGAAGCAATTCAAGTGTACACTTTGTCAGAGATGCTTCGCGCAAAGAGCCGCTCTGAACAATCACATGCTGTCGCACACTCGGGACAAGCCGCACGCTTGCAGCGTCTGCGCGAAGACTTACAAAAGAAAGTCCGAACTCATGAGGCACTCGATGGTTCACACCGGCGAGCGGCCCTACGAGTGCAAAGAGTGCCTGATGACATTCCGCGAGAAGGCAAAGCTGAATTCGCACATGCTAGTTCACACCGGCGAGAAGCCGCACGCCTGCCACATTTGCCAGAAGGCTTGCGCGAGAAAGTCCGATCTAACTAGTCACATGCTCTCGCACACTGGCGGACAGTACGACTGTCACGTGTGCGAGAAGATTTTCACCCGCAAGTCGGACTTGAATCGACACTCATTAATTCACACGGGCGAGAAGCCGTTCGCCTGTGAACATTGTGATATGGCCTTTAGGGAGAAGACGCGACTGAATTCGCACATCCTCGTGCACACTGGCGACAGGCGGCACGTTTGTCACATTTGCCAAAAGTCCTTCAAGGAGAAGACCACGCTGAAGAAGCACTTGCTCACTCACATGGGCGAGCGGTCCTACGAATGCTACGTCTGCCAAAAAACATTCACTCAAAAGACAACGTTGAACAGTCACATTTTAATTCACGACGATGTCTCGTCTTATGAGTGCAGCACTTGTCGGGAGGTATTTAACGACAGAGGTCAGTTGAAGAGGCATTTATTGACGCACACAGGGAATAAGTTTAACGACTGTCCGATTTGTTTGAAGAAATTCACCCACAGATCGGCGCTGAATAATCATATTTCCACTTCGCACAGTTCCTAA
- Protein Sequence
- MEDSVMLEKALLSIESHDMDFSVVEMEKLDLDNENVHHQHWETDANLCDKDETSLQRCFINAISFDSISQEQLVEKSPPLPINNFQQTKFYKIQCFICQKWFLNNDTMVTHLKLHCSGNNCQVCDQNFPDSETLCSHMLIHIGMNYTQKTSFSDRLILDNQLHLHSNDGVEDEERGEGEERGGGEERSRGKERGEERGGGEERGRGEERKEGEGEETEGTVGFQEQFEVSENISKCDSYFCDICQESFGERSDFNRHCLIHGSFGEREKFESEVRHHLHHQRRTKQFKCTLCQRCFAQRAALNNHMLSHTRDKPHACSVCAKTYKRKSELMRHSMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHACHICQKACARKSDLTSHMLSHTGGQYDCHVCEKIFTRKSDLNRHSLIHTGEKPFACEHCDMAFREKTRLNSHILVHTGDRRHVCHICQKSFKEKTTLKKHLLTHMGERSYECYVCQKTFTQKTTLNSHILIHDDVSSYECSTCREVFNDRGQLKRHLLTHTGNKFNDCPICLKKFTHRSALNNHISTSHSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00883232; iTF_00882381;
- 90% Identity
- iTF_00883232;
- 80% Identity
- -