Basic Information

Insect: Leptopilina syphax
Gene Symbol: -
Assembly: GCA_032872505.1
Location: CM065471.1:43505483-43508960[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.072 14 7.7 0.4 2 23 27 48 27 48 0.88

2 18 9e-05 0.017 16.8 2.1 1 23 63 85 63 85 0.95

3 18 1.7e-05 0.0032 19.1 1.3 2 20 102 120 101 122 0.95

4 18 7.5e-05 0.015 17.1 0.9 2 23 131 152 130 152 0.97

5 18 0.0076 1.5 10.8 0.3 2 23 157 178 156 178 0.96

6 18 0.0041 0.8 11.6 3.1 3 23 186 207 185 207 0.92

7 18 0.00012 0.023 16.4 0.5 1 23 216 239 216 239 0.96

8 18 8.8 1.7e+03 1.1 6.6 1 23 250 272 250 272 0.98

9 18 1.3 2.5e+02 3.7 0.1 2 9 279 286 278 291 0.86

10 18 3.6e-05 0.007 18.1 2.2 3 23 358 379 356 379 0.95

11 18 2.2e-05 0.0043 18.8 4.6 1 23 385 407 385 407 0.97

12 18 1.2 2.4e+02 3.8 0.2 1 23 411 433 411 433 0.88

13 18 1.5e-05 0.0029 19.3 1.1 3 23 441 461 439 461 0.97

14 18 1.7e-05 0.0033 19.1 0.4 1 23 467 489 467 489 0.95

15 18 0.11 22 7.1 2.5 1 23 495 517 495 517 0.97

16 18 2.1e-05 0.004 18.8 0.5 2 23 524 545 523 545 0.97

17 18 3.2e-07 6.2e-05 24.5 0.6 1 23 551 573 551 573 0.98

18 18 1e-07 2e-05 26.1 1.9 1 23 579 601 579 601 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.072	14	7.7	0.4	2	23	27	48	27	48	0.88
2	18	9e-05	0.017	16.8	2.1	1	23	63	85	63	85	0.95
3	18	1.7e-05	0.0032	19.1	1.3	2	20	102	120	101	122	0.95
4	18	7.5e-05	0.015	17.1	0.9	2	23	131	152	130	152	0.97
5	18	0.0076	1.5	10.8	0.3	2	23	157	178	156	178	0.96
6	18	0.0041	0.8	11.6	3.1	3	23	186	207	185	207	0.92
7	18	0.00012	0.023	16.4	0.5	1	23	216	239	216	239	0.96
8	18	8.8	1.7e+03	1.1	6.6	1	23	250	272	250	272	0.98
9	18	1.3	2.5e+02	3.7	0.1	2	9	279	286	278	291	0.86
10	18	3.6e-05	0.007	18.1	2.2	3	23	358	379	356	379	0.95
11	18	2.2e-05	0.0043	18.8	4.6	1	23	385	407	385	407	0.97
12	18	1.2	2.4e+02	3.8	0.2	1	23	411	433	411	433	0.88
13	18	1.5e-05	0.0029	19.3	1.1	3	23	441	461	439	461	0.97
14	18	1.7e-05	0.0033	19.1	0.4	1	23	467	489	467	489	0.95
15	18	0.11	22	7.1	2.5	1	23	495	517	495	517	0.97
16	18	2.1e-05	0.004	18.8	0.5	2	23	524	545	523	545	0.97
17	18	3.2e-07	6.2e-05	24.5	0.6	1	23	551	573	551	573	0.98
18	18	1e-07	2e-05	26.1	1.9	1	23	579	601	579	601	0.99

Sequence Information

Coding Sequence: atgaaaatattggaaaattctcCCCCAAGTGAAAATGAGGAAGAAAGTTCAGAGGATGAGGAAATAACAAAAGAGGCTAAATGCAGTATTTGTGATGAGCAATTCAAAACTGCTAATGTACCCGAAAAACATTGGAAATCTCACGAGGCAACATATTTTCCAAATGGTGCAAACAATCCCGGATTTTTTGAATGCGATCAATGTGATAAGAAATTTTCCAAGCGATTTCAACTCGGTCGTCATAGAACTGcgcataaattgaatatcaccgAGATTTtaaagccaaaaaaaaaatttgaaaaacgttGTCCCCTTTGTCACAAACGATTCCGTTCACCTGAGACTTTTCAAAAGCACATGGAAGAATCAAATCCTGATCATCGAGAAGTAGAATGtgattattgcaaaaaaatctaCAAATCAAGAAGAACATTGATCATGCACATAAAACAACAcgaggaaaaattaatttgtcacATTTGTGGTGCTACGAGAGCTTCAGTTGGTTCAATGACAATGCACATAAGACGACACAATAAAGATTACAATGTATTTTGTGATCTTTGCAATAAAGGATTTTACCATAAGGCCGAACTTCGTCTACATTTATTTCACGGTCACACCGACAGGCTGGCAATTCGTCCTTTTATCTGTCAATTTTGCGGCAATAGTTATCGTTCCTCGgactatttaaaaatacacgTGAATTCCGTTCATCTCTACGCCAATGAATATAAACGTAAACGCTACAAATGTGAATTATGCAATTTTGACACTCATCTGTTGAAATGCCTGACGAATCACAAGAAAATGCACACCGGTGAAAATCTTATTCCCTGCAAATATTGCGACAAGTCCGTGGACGTTGCTGAGGATGagacaattgaattatttcccaATGAACAATTAATCGATTGCAGTTTCGATGAATCGGACGAGATCCAAAGAAATTTCGACGTCAAAATGGAAAATTCtccaatagaaaaaataattgagaatgaaattaattttcaaaaagagaaaaaagaagaggaagaggaagaggaaaagaaagagaaaaaaaggacgaattgtgaaaaatgtaacaaaacATTTGCCACCGCGGAAAAATTACACAAACATCAAATAAAAGCTCATCAAATCGAAAAACCCCATCAATGTAATTCCTGCGGGAAATCATTCAAAACtgccgaatttttaaaaactcatcgTAAGCAACACAATAAGCGTTTTGTTTGCGACGTTTGTGGAATATTAAAAGTATCCGGCTACGATTTACGTCTTCACAAAAAGAAGCACTACAAGGAATACATAACGTTCTGTGATATTTGCAAAAAAGGATTTTACACGAGTCAAACTTTAGAGAGGCATTTATTGACGCACACTGGGGAGAAGCCGTTTTTGTGCGATATTTGTAATACGTCATATGCGAGTGCAACTTATTTGAAGATACACATGAAATCGCATGGCGAACGGGAGAAGCATAAATGTAATATTTGCGATTTCGAGAGTCATTGGAAGGCTGCGTTAAAAGTGCATTTAAAAACGCATACGGGCGAAAATcagataaaatgtaaaatttgcgATAAATTAGTGTCGAgtaaaaattatcttcaaagtCATATTCGTATTCATTCCGGTGAGAAACCACATGTTTGTGAAATTTGCGGCAAAGCGTTTAGCgtgagaaaatatttaattgtccaTCTTAGAACGCACACTGGCGAGAGACCGTATGAATGTAAAGTTTGTCAGAAGCGATTCACTCAACAGGGTTCATTAAATTCTCATATGAAATCACATCAAGAacgtaaatga
Protein Sequence: MKILENSPPSENEEESSEDEEITKEAKCSICDEQFKTANVPEKHWKSHEATYFPNGANNPGFFECDQCDKKFSKRFQLGRHRTAHKLNITEILKPKKKFEKRCPLCHKRFRSPETFQKHMEESNPDHREVECDYCKKIYKSRRTLIMHIKQHEEKLICHICGATRASVGSMTMHIRRHNKDYNVFCDLCNKGFYHKAELRLHLFHGHTDRLAIRPFICQFCGNSYRSSDYLKIHVNSVHLYANEYKRKRYKCELCNFDTHLLKCLTNHKKMHTGENLIPCKYCDKSVDVAEDETIELFPNEQLIDCSFDESDEIQRNFDVKMENSPIEKIIENEINFQKEKKEEEEEEEKKEKKRTNCEKCNKTFATAEKLHKHQIKAHQIEKPHQCNSCGKSFKTAEFLKTHRKQHNKRFVCDVCGILKVSGYDLRLHKKKHYKEYITFCDICKKGFYTSQTLERHLLTHTGEKPFLCDICNTSYASATYLKIHMKSHGEREKHKCNICDFESHWKAALKVHLKTHTGENQIKCKICDKLVSSKNYLQSHIRIHSGEKPHVCEICGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHQERK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00882378;
90% Identity: iTF_00882378;
80% Identity: -