Lhet030793.1
Basic Information
- Insect
- Leptopilina heterotoma
- Gene Symbol
- -
- Assembly
- GCA_015476425.1
- Location
- JABAIE010000069.1:1022471-1030307[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.094 20 7.5 0.4 2 23 120 141 120 141 0.88 2 17 0.00012 0.025 16.6 2.1 1 23 156 178 156 178 0.95 3 17 2.2e-05 0.0046 18.9 1.3 2 20 195 213 194 215 0.95 4 17 9.8e-05 0.021 16.8 0.9 2 23 224 245 223 245 0.97 5 17 0.0099 2.1 10.5 0.3 2 23 250 271 249 271 0.96 6 17 0.0054 1.1 11.4 3.1 3 23 279 300 278 300 0.92 7 17 0.00016 0.033 16.2 0.5 1 23 309 332 309 332 0.96 8 17 1.7 3.6e+02 3.5 0.1 2 9 372 379 371 384 0.86 9 17 4.7e-05 0.0098 17.9 2.2 3 23 451 472 449 472 0.95 10 17 2.8e-05 0.006 18.5 4.6 1 23 478 500 478 500 0.97 11 17 1.6 3.3e+02 3.6 0.2 1 23 504 526 504 526 0.87 12 17 1.9e-05 0.0041 19.1 1.1 3 23 534 554 532 554 0.97 13 17 2.2e-05 0.0047 18.9 0.4 1 23 560 582 560 582 0.95 14 17 0.15 31 6.8 2.5 1 23 588 610 588 610 0.97 15 17 2.7e-05 0.0057 18.6 0.5 2 23 617 638 616 638 0.97 16 17 4.2e-07 8.8e-05 24.3 0.6 1 23 644 666 644 666 0.98 17 17 1.3e-07 2.8e-05 25.9 1.9 1 23 672 694 672 694 0.99
Sequence Information
- Coding Sequence
- ATGTATGGACCTCGTGCCTTATTTTCTGTTGTACGAATTCACTACAAAAAAAATGATGTTTCGGATGGAACAGCAAAAAAAGAAGAAAGGCCACGGAGAGGACGAAAGAGAAAAAAAACAGCGAAGGAAAATAGAATCAAAATCGAACCGACAATTAAAAATGAAATCGAAATCGATTTTCTAGAAGTTAAATTGGAACCCAATGTAATCGTAGATCAACCAAAAAAGAAAAAATCGCGTAGAAAACAAATTCCAGTTGCGAGACGAACCAGAGCTCAAATGAAAATATTGGAAAATTCTCCCCCAAGTGAAAATGAGGAAGAAAGTTCAGAGGATGAGGAAATAACAAAAGAGGCTAAATGCAGTATTTGTGATGAGCAATTCAAAACTGCTAATGTACCCGAAAAACATTGGAAATCTCACGAGGCAACATATTTTCCAAATGGTGCAAACAATCCCGGATTTTTTGAATGCGATCAATGTGATAAGAAATTTTCCAAGCGATTTCAACTCGGTCGTCATAGAACTGCGCATAAATTGAATATCACCGAGATTTTAAAGCCAAAAAAAAAATATGAGAAACGTTGTCCCCTTTGTCACAAACGATTCCGATCACCTGAGACTTTTCAAAAACACATGGAAGAATCAAATCCGGATCATCGAGACGTAGAGTGTGATTATTGCAAAAAAATCTACAAATCAAGAAGAACATTGATAATGCACATAAAGCAACACGAGGAAAAATTAATTTGTCACATTTGTGGTGCTACGAGAGCTTCAGTTGGTTCAATGACAATGCACATAAGACGACACAATAAAGATTACAACGTATTTTGTGATCTTTGCAATAAAGGATTTTACCATAAGGCCGAACTTCGTCTACATTTATTTCACGGTCACACCGACAGGCTGGCAATTCGTCCTTTTATCTGTCAATTTTGCGGCAATAGTTATCGTTCCTCGGACTATTTAAAAATACACGTGAATTCCGTTCATCTCTACGCCAATGAATATAAACGTAAACGCTACAAATGTGAATTATGCAATTTTGACACTCATCTGTTGAAATGCCTGACGAATCACAAGAAAATGCACACCGGTGAAAATCTTATTCCCTGCAAATATTGCGACAAGTCCGTGGACGTTGCTGAGGATGAGACAATTGAATTATTTCCCAATGAACAATTAATCGATTGCAGTTTCGATGAATCGGACGAGATCCAAAGAAATTTCGACGTCAAAATGGAAAATTCTCCAATAGAAAAAATAATTGAGAATGAAATTAATTTTCGAAAAGAGAATGAAGAAGAGGAAGAGGAAGAGGAAAAGAAAGAGAAAAAAAGGACGAATTGTGAAAAATGTAACAAAACATTTGCCACCGCGGAAAAATTACACAAACATCAAATAAAAGCTCATCAAATCGAAAAACCCCATCAATGTAATTCCTGCGGGAAATCATTCAAAACTGCCGAATTTTTAAAAACTCATCGTAAGCAACACAATAAGCGTTTTGTTTGCGACGTTTGTGGAATATTAAAAGTATCCGGCTACGATTTACGTCTTCACAAAAAGAAGCACTACAAGGAATACATAACGTTCTGTGATATTTGCAAAAAAGGATTTTACACGAGTCAAACTTTAGAGAGGCATTTATTGACGCACACTGGGGAGAAGCCGTTTTTGTGCGATATTTGTAATACGTCATATGCGAGTGCAACTTATTTGAAGATACACATGAAATCGCATGGCGAACGGGAGAAGCATAAATGTAATATTTGCGATTTCGAGAGTCATTGGAAGGCTGCGTTAAAAGTGCATTTAAAAACGCATACGGGCGAAAATCAGATAAAATGTAAAATTTGCGATAAATTAGTGTCGAGTAAAAATTATCTTCAAAGTCATATTCGTATTCATTCCGGTGAGAAACCACATGTTTGTGAAATTTGCGGCAAAGCGTTTAGCGTGAGAAAATATTTAATTGTCCATCTTAGAACGCACACTGGCGAGAGACCGTATGAATGTAAAGTTTGTCAGAAGCGATTCACTCAACAGGGTTCATTAAATTCTCATATGAAATCACATCAAGAACGTAAATGA
- Protein Sequence
- MYGPRALFSVVRIHYKKNDVSDGTAKKEERPRRGRKRKKTAKENRIKIEPTIKNEIEIDFLEVKLEPNVIVDQPKKKKSRRKQIPVARRTRAQMKILENSPPSENEEESSEDEEITKEAKCSICDEQFKTANVPEKHWKSHEATYFPNGANNPGFFECDQCDKKFSKRFQLGRHRTAHKLNITEILKPKKKYEKRCPLCHKRFRSPETFQKHMEESNPDHRDVECDYCKKIYKSRRTLIMHIKQHEEKLICHICGATRASVGSMTMHIRRHNKDYNVFCDLCNKGFYHKAELRLHLFHGHTDRLAIRPFICQFCGNSYRSSDYLKIHVNSVHLYANEYKRKRYKCELCNFDTHLLKCLTNHKKMHTGENLIPCKYCDKSVDVAEDETIELFPNEQLIDCSFDESDEIQRNFDVKMENSPIEKIIENEINFRKENEEEEEEEEKKEKKRTNCEKCNKTFATAEKLHKHQIKAHQIEKPHQCNSCGKSFKTAEFLKTHRKQHNKRFVCDVCGILKVSGYDLRLHKKKHYKEYITFCDICKKGFYTSQTLERHLLTHTGEKPFLCDICNTSYASATYLKIHMKSHGEREKHKCNICDFESHWKAALKVHLKTHTGENQIKCKICDKLVSSKNYLQSHIRIHSGEKPHVCEICGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHQERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00883231;
- 90% Identity
- iTF_00883231;
- 80% Identity
- -