Lsyp027841.1
Basic Information
- Insect
- Leptopilina syphax
- Gene Symbol
- rdx
- Assembly
- GCA_032872505.1
- Location
- CM065474.1:842934-846909[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.3e-28 5.6e-26 92.2 1.5 3 108 110 214 108 216 0.94 2 5 0.24 1e+02 4.5 0.0 80 109 218 247 213 248 0.91 3 5 2.3e-22 1e-19 72.1 1.4 5 109 411 509 407 510 0.93 4 5 6.1e-27 2.6e-24 86.8 0.4 3 109 604 708 602 709 0.95 5 5 0.34 1.5e+02 4.0 0.0 78 108 709 739 706 741 0.89
Sequence Information
- Coding Sequence
- ATGGAAAATCTCAAATCAAAATGTGaggaatatttaagaaataatataacAATGGAAAGTGTGAGTCCAGTTCTGATGTTGGCCGTTGCATGTGAAACGAAATTTCTGTTGAAACACTGTCttcattttattttgcaaaatgttaaTAGTCTCGCAAAATCGAATAATTTACAATGCTTGAAAAGTGAACCTATTATAATACTGAATATTCTGAAACAATTATTTGAGAACACAGCGAATGGCGATATGTCCATTACTGACAATATAAtactctattttaaaaatagtgcaTCACAGATTGATTGTCAAATGTTAAGGGATTATGAACCATTTTTAAATAGCGAGATTTTAAGTGACATCACAATTCAAGTTGGTGAGAAAATTTATCAATGTCACAAATTAGTTTTAGCTGCTAAAAGTCCAGTATTGAGAAGAATGCTAATGAGCAATATGAAAGAagctattaataattttatcgaaattaaaGATATGAAAGTTGAAGTATTTCAAGAAGTACTCagatacaTGTATACGGGAAAAGTGGAAAATTTACTGGAAGAGAATGCACTCGACATATTGAAAGCTGCCGATCAGTACAATTTAgatcatttgaaaaaattatgccAAGAATATTTGGTTGATTTTTTGAGGCACGAAAATGTTGTAAAAATCGTCAAAGTTGCAAACACATATAATGCGCCTTTTTTAAGAAAGAGTTGCGTTTATTTTATTGTCAAGCAAAtgatggaattttcaaaagtacCCGACACATGTTTCACTTGGACACTAAATGATTTCGAAGAATGTAACATTGATTCTCTACCAGAAAAGAGTTTTTCTTCGGCAAATTTTACAACACTAAGAGATCCAAGTAGAAAATGGCAATTACTTCTCTCCATTGAGAAATTAAACCAAATTTATCGTTCAAGCTCCAAATGTGATAATTCCAATTGCTTTAAGAAAACAATAACTAAAAAGATCGTTAATCTCAAAATTCTATCCAATGAATTTATTTCTAATCCGGAGAATATCAGAGTTGACATTTCAATGAGAaacaactttgaaaaatttactagaaGTTTAATTGTTTCTGGAAATAGAGAGCAATACgcttacgaaaattttattgattgtGAAACAATGTTAAAAATGGTCCAAGAAGGAAAATTGGAAATATTCATAGAAATGTTTTTCCCAGACGAGAAGAATGTTAAATATCTCGATATAATCCGAAGTTCAGAATTTTTGAGcgatgtgaaaattttaataacggATCGTACATTTTACGCTCATAAGgCTATTTTAGCTGCTAGGAGTCTATTTTTCTACCAACTATTTCAAAAGGAGACGGAAATAACCGAAATCAAGGATCTTGACATAATGCCAAAAGTTTTTACCGAAATTCTAAAATACATTTACTCCGATTACGTGGAAAAATGGTACCTTTCGAGTGACATTCTAATCGCCGCGAATATTCTAAAAATGGAGGATTTAAAGCTAGAATGCGAAAATTACTTgagaaataatttaacaatGGATTGtattaatacaattctaatcGTATCTGTTGAATGCGATACTAAATTTCTACTGAAACATTGTCTAAACTATGCTCTGAGGAACATGAGTTTGTTgcgaagtttaaaaaatttccacacACTTAAAACAAAACCACTTGTCGTACTCCGTGTTCTACAAGAAATCCTCTTTCAAttacaaaatggaaaaataacaattgtCGACAATATAAATCTCTCCTACTCGAAGATTGCAACAAACAAAAGTAGTTATTTACTAAAAGAATACGAGTCGTTTTTGAATAATGAAAATCTAAGTGACATTACAATTCGAGTCGacgaaaagaattttcaatgtCATAAAATTATTCTTGCTGCAAAAAGTCAAGTACTACGTGAATTAGTTACGAAAAATATGAGCGAAAATCTTGGAAATGTCATGGAACTTACGGATATTAAAGGGGAAATTTTCGAAGAGGTTCTCAGATACATGTACACGGGAAAAGTTAATAATCTACAAGAGTACGGTATCGATATTCTAAGAGCCGCAAATCAGTACAAATTGgagcatttaaaaaatatatgtgaAGAATTTCTTGTGGCAAAATTAACACACGATAATGTGGTGGAAACGTTAAAAATTGCAGACGCCTGTAATGCTCCATTTCTCGTAAAACATTGCAGTCATTATATTCTAAAATACTTGATTTCAAATTTCCAACGAAAGGAGTTTAGTAAGAGAATTAATCTCGACATGTTTATTACTTGCAAGCACAATATTTTCTACGAATTTCTTAATATACTGAGCAAACAATGCCAGGTTTtgtataactaa
- Protein Sequence
- MENLKSKCEEYLRNNITMESVSPVLMLAVACETKFLLKHCLHFILQNVNSLAKSNNLQCLKSEPIIILNILKQLFENTANGDMSITDNIILYFKNSASQIDCQMLRDYEPFLNSEILSDITIQVGEKIYQCHKLVLAAKSPVLRRMLMSNMKEAINNFIEIKDMKVEVFQEVLRYMYTGKVENLLEENALDILKAADQYNLDHLKKLCQEYLVDFLRHENVVKIVKVANTYNAPFLRKSCVYFIVKQMMEFSKVPDTCFTWTLNDFEECNIDSLPEKSFSSANFTTLRDPSRKWQLLLSIEKLNQIYRSSSKCDNSNCFKKTITKKIVNLKILSNEFISNPENIRVDISMRNNFEKFTRSLIVSGNREQYAYENFIDCETMLKMVQEGKLEIFIEMFFPDEKNVKYLDIIRSSEFLSDVKILITDRTFYAHKAILAARSLFFYQLFQKETEITEIKDLDIMPKVFTEILKYIYSDYVEKWYLSSDILIAANILKMEDLKLECENYLRNNLTMDCINTILIVSVECDTKFLLKHCLNYALRNMSLLRSLKNFHTLKTKPLVVLRVLQEILFQLQNGKITIVDNINLSYSKIATNKSSYLLKEYESFLNNENLSDITIRVDEKNFQCHKIILAAKSQVLRELVTKNMSENLGNVMELTDIKGEIFEEVLRYMYTGKVNNLQEYGIDILRAANQYKLEHLKNICEEFLVAKLTHDNVVETLKIADACNAPFLVKHCSHYILKYLISNFQRKEFSKRINLDMFITCKHNIFYEFLNILSKQCQVLYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -