Lsyp001429.2
Basic Information
- Insect
- Leptopilina syphax
- Gene Symbol
- MBD-R2
- Assembly
- GCA_032872505.1
- Location
- CM065468.1:24723243-24726557[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-14 1.2e-10 42.1 0.1 6 69 396 459 391 467 0.90 2 2 0.37 2.9e+03 -0.7 0.0 43 76 971 1004 970 1005 0.86
Sequence Information
- Coding Sequence
- ATGTCCATGAAATCTCCTACAACTTATTCTCAAGACGACTTGGACCTTATAAATTCAGAAATTTCTCATTTCCATTATTCCACACCAacaacatcatcatcatcatctgaGAATCAAAATCAACCGAAAACGACGATAAATACAGAAAGATTTTACAATAATGTAGaggaattttcaaatacattaaaTCCACTAAATATTGACGAACTACAAAATGCCTAcaatattgatttaataaataatctatCGGGAAAAtcagaatttattgaaaatgaaaatataccaatttcaattaataattcaacGGGTAATGTTCAACCTCTTATGACAATAGAAAATGTTGCTGCAAATTTTCATCCAGAGGACGGTAATATTAGATTTCAGTGCGAGAAGAAAAGTGAGAAAGCTGACGAATTAAagagtaaacaaataaaaggTTTAAACTTTTTTCCTGGCGATAAACTCGAGGCAAAGGATTTCAATGAGAAATGGTATACGGCAAAAGTTGTTGAAACCGATTGGGTCGAAAGAGAAGTTCTGATTCATTTCGATAAATGGAGTGCAAGATTTGATGAATGGATACCTATGGATAGTCCACGATTACGAATGTTACAAACACAATCACGTGAAATGAAGACAAAGGATTTTGTCGCGGGCGAAAGAATTCTCGCCACATGGGCCGATGGCAGAAAATATCCAGCGAAAGTCAACGCTGTTTTGGGAAATGATCGTTACGATGTACTATTCGACGATGGTTACACGAAAATTGTGAGATCATCGAAAATGTCAAAATTAGGTGGACCTCTCGACGAGCAGAATGACAGTGAGGATTTCATTGGCAGTAAGGAGAAGCGCAAGGATAGAAATCGAAAATATCAGGTTATGGATCTCTTTCAGCGTAAACCAAAGAAAGGCGGTGAGATTAAGTATGCGAAAAGAGGTCGTCCTTGCAAGGAGGAAATAGTCCCGGAGCCATTGATCGATAATGGCTCGTTCTCCGGCTCTCATGACGATTCAAGTACGGAGGTGCTCCACGGTTTTGAAAATCCCACCGCAAAAGTGAAGACTTACATgaagaaggagaaaaaagatTCGAACATCGATCCTAGTTTTCAGCCCGAATGGAAGGATGGCGAACCACAAGGAATTGAGTCGTTTATCGAGGGACCACGACGATCGATTATTGTCGCTGATAAAAGACTACCACCCGGATGGGTGAAACACTTCACCCAGAGGAAGGCGGGATCGTCAGCTGGCAAGTGGGACGTACTCTTCATCCACGAGGGCAGTGACAAGAAATTCCGTTCTCGAAACGACATCCGTGCGTATATGGTGAGTCAGGGGCAATTCGACTTCGATCCGGAGATGTTCGACTTTTGTATTCATCGAAAGAAGAAGGCGAGGGGTGAGAAGGTAATTTCAGACACACCACCTGCTAGAAGATCGAAATCATCCTCGAGAGCAATTCCGAGTCCTCTACTGCCTGTAACTCCGATTCCAGTCACGCCAGCACCAGCTTTACTCGAAAACAGTGCAGTATTCATCGGCGGTCTACGTGTCGAAATGGAGGACAGCTCCTACAAGTGTCCAAAGGATGGTTGTCTAAAGAATTTCCGGAAAGAAAATCTTTTGCAGATGCACATCAAACACTACCATCCGGAGTACTCAAAATTTCTCGGTTCAACACCGAATGTCGCCGATTTGGCTTATGCAAGAACAATCGGCGAGTCTATCGACGACATCATCCCTAAGCAAACGCACAATTTTCTGGAGAAAATCAACAAGtttgagaagaaaaaagaaaaatcccaACTGCCCGTTCTTCAGGCTCTTTCGCCATCGCAGCCGATCGCCACTGCGCCATCGCCAACGCCGCCTGTCCTCGAACTCGAGGTCAACCGAACCGAGGAAAGTATTCCAAAAGACGAGAAAATCGAATTAGGATCGCCCTTGAGAACCAACAGCGAGACTCTCCGCAAGGAAACCGATTGCGCAATGTCGCCAGGATCCCTCTTCGATCTGAAGATCCGAGAGGAAAAAACTAGTGGCATTAAAACTCTCCTCCCAGTTCGTGCGCCAGACTCGAGATCAAAATCCGTCGACGAAATGATGACACCAGGCCAACGGGGCAAAAGTTTGAGAAAACGTAACCTTACGGACTATCATCCAGATATTCCCCGCGTAAAGAAACGACAGAGTATTCAAGATTCTAATTTCGAGGATTTGGACGAGAGTACAATGGACACGGAGGGCCCCGCCACTCCCACCTATCGTTTCAGTCGACGAAAATCCGACGCCAAGAACGACGAGAGCAATGACAGTAAACACGAGGGTATGATGCTGATCAATGGCGAATTGATAAAAGTCGAACAACTCCGCAAGGAGGAAATTATCAACTGCACTTGTAAATTTATGGAAGAGGACGGTCTCATGATCCAATGTGATCTTTGCCTCTGTTGGCAGCACGGTCACTGCAACGCCATCGAGAAAGAAAAAGACGTTCCCGACAAGTACGTCTGCTACATCTGTCGTCATCCCCACCGTCAACGACCATCAATGAAATACAATCTCGATCAAGAATGGATGAAGGAAGGCAAGTTACCAACTCTCTCGATCAGCACCAAAAACAACGACCTCGCCTTCAAGCAACGCACCGCAATGCTAAAACGCTCCTACGATCTTATCTCCTTCTTATTCCAAATCCAACACCTCCTTCACAGTCTCCGCGTGAAAATTAACGTCGCACAAAAAAAGGACCATCCCAAACTCTATCTATGGGCGAAAAATTGGGAGAAATTCCTAATTCCAAAACCTGACATTTCGCCCGTGCCGATTTTGGAAATAATCGAAAACACCGAAACAGTGGCCGAAGTGAAAAAGGAAGAAAACGATAATACACCAGAAATTAAAATCACAACTGATTCCGATTTGGTAAAAATACTCGAAGACGGTGCACTTGCCGATGACacgaaaaaggaaaattttctattcagcGCATTGACGAAAAGTGAGGATAAAACAGAAAGTggtctaaaagaaaatttaaagacaCCATTGGAATCGAAACCATTTATTCCCGAACCTGAAGCACCGATTGATCCCACAGAATGTCGAATGAGACTCCTGGAGCATATTGATCATTTTCAAAACTATGTTGCTTCAAAATTGACGAGCATTGAAGCACAAGTTCAAGTTTTGGAGGAAATGGATCCGGATACAATTCCTGAAATTGAAGTTCAACCGAGAACGAAGCAAACTGTGCAAATGTTACTTCGTGATTTGGGCACCATCAGAAAACTTGCTTCATTgtgttga
- Protein Sequence
- MSMKSPTTYSQDDLDLINSEISHFHYSTPTTSSSSSENQNQPKTTINTERFYNNVEEFSNTLNPLNIDELQNAYNIDLINNLSGKSEFIENENIPISINNSTGNVQPLMTIENVAANFHPEDGNIRFQCEKKSEKADELKSKQIKGLNFFPGDKLEAKDFNEKWYTAKVVETDWVEREVLIHFDKWSARFDEWIPMDSPRLRMLQTQSREMKTKDFVAGERILATWADGRKYPAKVNAVLGNDRYDVLFDDGYTKIVRSSKMSKLGGPLDEQNDSEDFIGSKEKRKDRNRKYQVMDLFQRKPKKGGEIKYAKRGRPCKEEIVPEPLIDNGSFSGSHDDSSTEVLHGFENPTAKVKTYMKKEKKDSNIDPSFQPEWKDGEPQGIESFIEGPRRSIIVADKRLPPGWVKHFTQRKAGSSAGKWDVLFIHEGSDKKFRSRNDIRAYMVSQGQFDFDPEMFDFCIHRKKKARGEKVISDTPPARRSKSSSRAIPSPLLPVTPIPVTPAPALLENSAVFIGGLRVEMEDSSYKCPKDGCLKNFRKENLLQMHIKHYHPEYSKFLGSTPNVADLAYARTIGESIDDIIPKQTHNFLEKINKFEKKKEKSQLPVLQALSPSQPIATAPSPTPPVLELEVNRTEESIPKDEKIELGSPLRTNSETLRKETDCAMSPGSLFDLKIREEKTSGIKTLLPVRAPDSRSKSVDEMMTPGQRGKSLRKRNLTDYHPDIPRVKKRQSIQDSNFEDLDESTMDTEGPATPTYRFSRRKSDAKNDESNDSKHEGMMLINGELIKVEQLRKEEIINCTCKFMEEDGLMIQCDLCLCWQHGHCNAIEKEKDVPDKYVCYICRHPHRQRPSMKYNLDQEWMKEGKLPTLSISTKNNDLAFKQRTAMLKRSYDLISFLFQIQHLLHSLRVKINVAQKKDHPKLYLWAKNWEKFLIPKPDISPVPILEIIENTETVAEVKKEENDNTPEIKITTDSDLVKILEDGALADDTKKENFLFSALTKSEDKTESGLKENLKTPLESKPFIPEPEAPIDPTECRMRLLEHIDHFQNYVASKLTSIEAQVQVLEEMDPDTIPEIEVQPRTKQTVQMLLRDLGTIRKLASLC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00880450;
- 90% Identity
- iTF_00881247;
- 80% Identity
- -