Lhet013457.1
Basic Information
- Insect
- Leptopilina heterotoma
- Gene Symbol
- -
- Assembly
- GCA_015476425.1
- Location
- JABAIE010000141.1:767378-774910[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2e-05 0.0042 19.0 2.7 1 23 325 347 325 347 0.97 2 12 0.00081 0.17 14.0 4.2 1 23 351 373 351 373 0.96 3 12 0.00031 0.065 15.3 4.1 1 23 378 400 378 400 0.96 4 12 1.2e-05 0.0025 19.7 3.8 1 23 452 474 452 474 0.98 5 12 0.0034 0.71 12.0 1.5 1 23 479 501 479 501 0.97 6 12 3.8e-05 0.008 18.1 2.1 1 23 550 572 550 572 0.98 7 12 0.00023 0.049 15.7 1.0 2 23 580 601 579 601 0.97 8 12 1.2e-06 0.00025 22.9 2.1 1 23 612 634 612 634 0.96 9 12 0.00027 0.057 15.5 1.6 1 23 640 662 640 662 0.97 10 12 0.00019 0.04 15.9 0.7 1 23 668 690 668 690 0.98 11 12 5.7e-06 0.0012 20.7 2.0 1 23 696 718 696 718 0.96 12 12 0.0001 0.021 16.8 0.3 1 22 724 745 724 745 0.96
Sequence Information
- Coding Sequence
- ATGGCAATGAATCCAGCATATTTTGGTTTACCAATGAATATGGATAGAGTTTGCAGAATTTGTCTTACGGAAAGTACAAATTTATCACCAATATTTTGTTCAAATCAGGAAGTGGTCCAATTTTCGGAAATTTCGCAAAAAATACAAATTTGTGGCTCAATTGAAATTCAAGAACAGGACGGTCTGCCTTCTTTAATTTGTAACGATTGCATCTTTAAATCGAGCATTGCCCATGAATTTCGGCAACTTTGCCAACATTCCGATGCTCGTTTGCGACTTTATTACAATAAACCTTCTAAAAGTAATGTGATGGAGAGCAGTACGCAGACAGATCCCCAAACTCGAATTGTGATATCAAAAAAGGCAACAAATCAGGAAAATAATTACAACGTTAAGGAAGAGGAACTTCACATTATGTCTGAAATACAACAATCAACAGAAACTTTTACACACGAGCAGGTCTCTTTGAATCAAAATCCCATAAGTATTCACGGTGAAAAAATGTTTGATTGCAATCTTCGATTTGAGGAACCCAATAAAGAGACTGATAGAATGACTGAAGATTTAGCGGTTGCCATTAATGAAACTGTTATAAATGCAACTGTAATTAATGCAAACGTTATCGATCCCATAACTGAAAGTGAGATACATCCAAACAGCATTCATCCAAATGTCATAAGTGTCGACGTCGTCACAGAGAATCCCCTCCAGATTGCATGCTCTGAAGGATTAATTGTTCCCACAGATGATAAAATTGATTCAACAAACAAGACTGACAATAGAATGGACCATTATCTCGACGAACAAATGTTGGTCGAAAGTTTAGAAGAGGACCAAGAGACAACACCCTCGAAACGTACATCAAACCGTAAAGTGAAATCAATTCATAATAAAACTGCCTTTAGCGATGAGGAAATTGATGACGATTATTACGATCAAAGTAGTGACAGTCAAGATTCCTTGGAACCAAAATTCAAATGTAAAATATGTTCAAAACGTTATTCAACGCAAAAGGGCCTCAAGAAACATTCCCTAGTGCATGACAAAAAACACAATTGTGACATTTGCCTAAAAACATTTTGCAAATTAGAAAATCTCGAGAAGCACAAATTAATTCACGCGACAAAACCCCATGCATGCCAATTGTGTCACACGTCATTCTCGAAACCTCAAAGTCTAGTGAAACATTTAAAATCGCACACGGAAAAAGTGAATGATATTATAAAGCAAATAAGTGACGATCCACAGGAATTGAATGAGCCAAAAAAAGAAATGAAAATCGAAGATGATAATGATGATGATCAATTGACGGGAAATAATGATACGGACGACTTTCAAAATACTCCGGAATTATTTAAATGTGAAATATGCGGTCAATATTGTTCGACAAAGAAGAATTTAAAACGTCACACACTCATACATGGGGAGAAAAAATATTCTTGTTATGTGTGTAAAAAATGGTTTTTCAGACCCGATACGTTAAAGAAGCATGCTGAGAAACATGGTCATGGTTTATTGGACAATTTGATAGAGGACAATAAACTCTTTGATTCGGACGACGAGCCATTTCCGAATACAGGGGGGAATATTTTCGGTGACAATGACACGGCGAAAAAGGACGAGAGCGATGAGGATGGAACTGGAGAGTACAAATGTCAACATTGCGATAAGATTCTGGCCACGAAGAAGGGTTTACGACGACATGTTTCGATGCATAAACCGAAAGCGGAACCAGTTACTTGTGAAATTTGCAAAAAGGTTTGTGCGAGCCAAGCACGACTGCTGATCCATCAAAAAACCCACAACAAACCGAAGGAAAAAGTACCTCGAGAATATCTCTGTCACATTTGCAGTAAAGTTTATCCAAGTAATTCATCATTAACATATCATATGCGAACTCACAGTGGTGTCAAGCCCCACGTCTGTAAAACTTGTAACAGTGGATTTACAACGACAACAAGTCTCGCGAATCACATACGAATTCACACCGGTGACAAGCCATTTGTCTGTCACGTGTGCAGTGCAGCTTTTGCCGTCAGTTCGGCATTTAGACGACATTTAACGCGTCACACTGGCGAGGCGAATTATCTCTGTAAAACTTGTGGCAAAGCATTCAAACGACTCAGCACCCTCAAGGAGCACACTTACACGCATTCCGGTGAGAAGCCATACGTTTGTAAAACATGCGGCGCCGCTTACAGTCACAGTGGCAGTTTATTTGCCCATCAAAAACGTTGCCGAGCACAATACGGCGAGACAATGGTGGTCGAGGAACATCACACTGTTGCTCATCACATTCATGTAAATAATGTGCAATCGGCCGTACGCTCACTAGCTGTGATAGGGCAAATGTTTTAA
- Protein Sequence
- MAMNPAYFGLPMNMDRVCRICLTESTNLSPIFCSNQEVVQFSEISQKIQICGSIEIQEQDGLPSLICNDCIFKSSIAHEFRQLCQHSDARLRLYYNKPSKSNVMESSTQTDPQTRIVISKKATNQENNYNVKEEELHIMSEIQQSTETFTHEQVSLNQNPISIHGEKMFDCNLRFEEPNKETDRMTEDLAVAINETVINATVINANVIDPITESEIHPNSIHPNVISVDVVTENPLQIACSEGLIVPTDDKIDSTNKTDNRMDHYLDEQMLVESLEEDQETTPSKRTSNRKVKSIHNKTAFSDEEIDDDYYDQSSDSQDSLEPKFKCKICSKRYSTQKGLKKHSLVHDKKHNCDICLKTFCKLENLEKHKLIHATKPHACQLCHTSFSKPQSLVKHLKSHTEKVNDIIKQISDDPQELNEPKKEMKIEDDNDDDQLTGNNDTDDFQNTPELFKCEICGQYCSTKKNLKRHTLIHGEKKYSCYVCKKWFFRPDTLKKHAEKHGHGLLDNLIEDNKLFDSDDEPFPNTGGNIFGDNDTAKKDESDEDGTGEYKCQHCDKILATKKGLRRHVSMHKPKAEPVTCEICKKVCASQARLLIHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHSGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGETMVVEEHHTVAHHIHVNNVQSAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00676990;
- 90% Identity
- iTF_00881470;
- 80% Identity
- iTF_00883240;