Ldro033905.1
Basic Information
- Insect
- Leptopilina drosophilae
- Gene Symbol
- -
- Assembly
- GCA_032873175.1
- Location
- CM065485.1:37073433-37081006[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.7e-05 0.0035 19.0 2.7 1 23 330 352 330 352 0.97 2 12 0.0007 0.14 13.9 4.2 1 23 356 378 356 378 0.96 3 12 0.00027 0.054 15.3 4.1 1 23 383 405 383 405 0.96 4 12 1e-05 0.0021 19.7 3.8 1 23 458 480 458 480 0.98 5 12 0.0029 0.59 12.0 1.5 1 23 485 507 485 507 0.97 6 12 1.1e-05 0.0023 19.6 2.1 1 23 556 578 556 578 0.98 7 12 0.0002 0.041 15.7 1.0 2 23 586 607 585 607 0.97 8 12 1e-06 0.00021 22.9 2.1 1 23 618 640 618 640 0.96 9 12 0.00023 0.047 15.4 1.6 1 23 646 668 646 668 0.97 10 12 0.00017 0.034 15.9 0.7 1 23 674 696 674 696 0.98 11 12 4.9e-06 0.001 20.7 2.0 1 23 702 724 702 724 0.96 12 12 8.8e-05 0.018 16.8 0.3 1 22 730 751 730 751 0.96
Sequence Information
- Coding Sequence
- ATGGCAATGAATCCAGCATACTTTGGTTTACCAATGAATATGGATAGAGTTTGCAGAATTTGTCTTACGGAGAGTACAAATTTATCGCCAATATTTTGTTCGAATCAGGAAGTGGtgcaattttcggaaatatcgcaaaaaatacaaatttgcgGCTCAATTGAAATTCAAGAGCAGGACGGTTTGCCTTCTTTAATTTGCAACGATTGCATCTTTAAATCGAGCATTGCCCATGAATTTCGGCAACTTTGCCAACATTCCGATGCTCGTTTACGACTTTATTACAATAAACCTTCGAAAAGTAATGTGAtgGAGAGCAGTACACAGACAGATCCCCAAACTCGAATTGTGATATCGAAAAAGTCAACAAATCAGGAAAATAATTACAACGTTAAGGAAGAGGAACTTCACATTATCTCTGAAATACAACAATCAACAGAAGCTTTTACTCACGAGCAAGTCTCTTTGAATCAAAATCCCATAACTATGCACggtgaaaaaatgtttgattgCAATCTTCGATTCGAGGAGCCTAATAAAGAGACTGAGAGAATGACTGAAGATTTAGCGGTTGCCATTAATGAAACAGTTATAAATGCATCAGTAATTAATGCAAACGTTATTGATCCGATAACTGAGAGTGAGATTCATCCAAACAGCATTCATCCAAATGTCATAAGTGTCGACGTCGTCACTGAGAATCCCCTTCAGATTGCATGCTCTGAAGGATTAATTATTCCCACTGATGATAAAATTGATTCAACAAACAAGACTGACAATAGAATGGACCATTATATCGACGAACAAATGTTGGTCGAAAGTTTAGAGGACCAAGAAGagacaacaacaacaacaacaacaccaTCGAAACGTACATCAAACCGTAAAGTGAAAtcaattcaaaataaaactGCCTTTAGCGATGAGGAAATTGATGACGACTATTACGATCAAAGTAGTGACAGTCAAGATTCCTTGGAACCAAAATTCAAAtgtaaaatatgttcaaaaCGTTATTCAACGCAAAAGGGTCTCAAGAAACATTCCCTAGTGCATGACAAAAAGCACAATTGTGACATTTGTCTAAAAACATTTTGCAAATTAGAAAATCTCGAGAAGCACAAATTAATACACGCGACAAAACCCCATGCATGCCAATTGTGTCATACGTCATTCTCAAAACCGCAAAGTCTAGTGAAACATTTAAAGTCGCACACGGAGAAAGTCAATGATATTATAAAGCAAATAAGTGACGATCCACAGGAATTGAATGAGCCaaaaaaagagatgaaaatcgaagacgataatgatgatgatCAATTATTGACGGGTAATAATGATACGGACGACTTTCAAAATACTCCGgaattatttaaatgtgaaaTATGCGGTCAATATTGTTCgacaaagaagaatttaaagCGACACACACTCATACATGGGGAGAAGAAATATTCTTGTTATGTGTGTAAAAAATGGTTCTTCAGACCCGATACGTTAAAGAAGCATGCTGAGAAACATGGTCATGGTCTGTTGGACAATTTGATAGAGGACAATAAACTCTTTGATTCGGACGACGAGCCATTTCCGAATACGGGGGGGAATATTTTCGGTGACAATGAGACGGCGAAAAAGGACGAGAGCGACGAGGATGGAACTGGAGAGTACAAATGTCAACATTGCGACAAGGTTTTGGCAACGAAGAAGGGTTTACGACGACATGTGTCGATGCATAAGCCGAAAGCGGAACCAGTTACTtgtgaaatttgcaaaaagGTTTGTGCGAGTCAAGCCCGACTGCTGATCCATCAAAAGACCCACAACAAACCTAAGGAAAAAGTACCTCGAGAATATCTCTGTCACATTTGCAGTAAAGTTTATCCAAGTAATTCATCATTAACATATCATATGCGAACTCACAGTGGTGTTAAGCCCCACGTTTGTAAAACATGTAACAGTGGATTTACAACGACAACAAGTTTAGCGAATCACATACGAATTCACACCGGTGACAAGCCATTTGTCTGTCACGTGTGCAGTGCAGCTTTTGCCGTGAGTTCGGCATTTAGACGACATTTAACACGTCACACTGGCGAGGCGAATTATCTCTGTAAAACTTGTGGCAAAGCATTCAAACGACTCAGCACCCTCAAGGAGCACACTTACACGCATTCCGGTGAGAAGCCATACGTTTGTAAAACATGCGGCGCCGCTTACAGTCACAGTGGCAGTTTATTTGCCCATCAAAAACGTTGCCGAGCACAATACGGCGAGACAATGGTGGTCGAGGAACATCACACTGTTGCTCATCACATTCATGTAAATAATGTGCAATCGGCCGTACGCTCACTAGCTGTGATAGggcaaatgttttaa
- Protein Sequence
- MAMNPAYFGLPMNMDRVCRICLTESTNLSPIFCSNQEVVQFSEISQKIQICGSIEIQEQDGLPSLICNDCIFKSSIAHEFRQLCQHSDARLRLYYNKPSKSNVMESSTQTDPQTRIVISKKSTNQENNYNVKEEELHIISEIQQSTEAFTHEQVSLNQNPITMHGEKMFDCNLRFEEPNKETERMTEDLAVAINETVINASVINANVIDPITESEIHPNSIHPNVISVDVVTENPLQIACSEGLIIPTDDKIDSTNKTDNRMDHYIDEQMLVESLEDQEETTTTTTTPSKRTSNRKVKSIQNKTAFSDEEIDDDYYDQSSDSQDSLEPKFKCKICSKRYSTQKGLKKHSLVHDKKHNCDICLKTFCKLENLEKHKLIHATKPHACQLCHTSFSKPQSLVKHLKSHTEKVNDIIKQISDDPQELNEPKKEMKIEDDNDDDQLLTGNNDTDDFQNTPELFKCEICGQYCSTKKNLKRHTLIHGEKKYSCYVCKKWFFRPDTLKKHAEKHGHGLLDNLIEDNKLFDSDDEPFPNTGGNIFGDNETAKKDESDEDGTGEYKCQHCDKVLATKKGLRRHVSMHKPKAEPVTCEICKKVCASQARLLIHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHSGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGETMVVEEHHTVAHHIHVNNVQSAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00676990;
- 90% Identity
- iTF_00880680; iTF_00882389; iTF_00883240;
- 80% Identity
- -