Lhet039675.1
Basic Information
- Insect
- Leptopilina heterotoma
- Gene Symbol
- -
- Assembly
- GCA_015476425.1
- Location
- JABAIE010000158.1:379611-384337[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.24 51 6.2 1.8 1 23 316 338 316 338 0.97 2 18 0.018 3.8 9.7 0.5 2 23 373 394 372 394 0.96 3 18 3.2e-05 0.0068 18.4 0.9 1 23 445 467 445 467 0.95 4 18 0.069 14 7.9 0.2 2 23 471 492 470 492 0.95 5 18 0.00028 0.06 15.4 2.4 2 23 526 547 525 547 0.97 6 18 0.00022 0.046 15.8 2.2 1 23 551 573 551 573 0.98 7 18 0.00095 0.2 13.7 0.4 1 21 579 599 579 603 0.92 8 18 0.00019 0.04 15.9 4.2 1 23 669 691 669 691 0.97 9 18 4.3e-05 0.0091 18.0 3.8 1 23 735 757 735 757 0.97 10 18 0.0003 0.063 15.3 0.7 1 20 762 781 762 783 0.94 11 18 0.05 11 8.3 0.3 2 23 794 815 794 815 0.97 12 18 3.1e-05 0.0065 18.4 0.6 2 23 854 875 853 875 0.97 13 18 2.8e-05 0.0059 18.6 1.6 1 23 880 902 880 902 0.95 14 18 0.00016 0.033 16.2 2.9 1 23 908 930 908 930 0.98 15 18 4.9e-06 0.001 20.9 0.4 1 23 946 968 946 968 0.95 16 18 4e-07 8.5e-05 24.4 0.6 1 23 974 996 974 996 0.99 17 18 0.0002 0.042 15.9 0.2 1 23 1002 1024 1002 1024 0.97 18 18 0.00082 0.17 13.9 4.2 1 23 1030 1052 1030 1052 0.96
Sequence Information
- Coding Sequence
- ATGGACGCCGTTGAAATAAATACGTCGGAGTCACCGCAAAATGAAGAGGGAATTGTATCAGCAATGGAAATATGTAGAGTTTGCCTCCTTGGAAATTTATTAATGCGAGACCTATTTCATGATAATGGGGTCGCATCATTGTCCGCTAAGGCCATGAGCTTTACCAACGTTAAGATGTTACCTGGTGATGGACTACCAGGACAAGTTTGTTGTGATTGTGCTGATAAATTAGAAGCTGCCTATGATTTTAAATTACAAGTAGAACAAGCTGACAGTGTGTTGAGAGAAAAATTTGACACTTTGAATATAAAAGAAGAGTTATTTTTTAATGACGTGGAAGTTCATTTAGAAGGAGAGAGAACGAGAGTAAGACGTGAAATTAATGATAATGGTGAATATGTTGAGGCGACAGAATCTTTGCACGACGATGGTAGAGACACTCTTTTAAAGGATCATCTTGCTCTTTTGCAAGTGGAAAAAATTGCAGAACAAGAGAGCATGTTACAGCACGTGCACAATTTTTCCGATCAACAACAACAGCAACAACAACAACAACAACAACATGGGATCAAGGACGAAAATCTCCAGGACGTTGAGTCTGAAAATATTCAAGAACAAAATTATCTCGATCAACAGGAATGCTCACAAATGAGTGATGACGATTTTAATAACGACGAACCTTTCGCTGACTCCCAAGAGTCCATGGAATATTCAACAATGGAGAAGGAAGGAGAAATGGAACAAGAACAGAATCAGGATCAAGATGCTTCCATTGAACAAATGGAACACGACTCGCCAGAAAGTGAAACACGTCGTATTAGACGTAAAGTGATACGTCAATCGACCGGATCGGAACACAATTCCGACGAGGAGAATTATTTCGAAAATTTGAATTTAAGTTCACGTTTGAAGAAGACACAGGACGGGCAATCAGAGAAGGTCTTCTTTATGTGTTATCTTTGTGATAAAGAATTTTTATCGAAGGGAATTTTAAAGGAACATATGCACTCACACGAGGAGGTGAGACGAACTCTCTCCTTGAAGAAAAAAGTTCCGGTCACGCCACAAAAATCAGCATTACCTTTAAAAACTCCTCCATCTGGTAAAAAGGCGAATAAATGCCCGTATTGTGGTAAAGAATATCTGTACATAATTTCCTTCAATAAGCACATAAAACAACACGAGAAGGATAAAGACGTAAAAAAGAGTGAATTTATGGCAGGCGATGATGATTCTGTCGATTACGTTGAGAATGTGAATTCCATCGGTGTTTTAGAGACAAGCATCGATGATAATGATTCCGAATCGGAAAATGAGAAAGAATCGGAAGTTTATCAATGCGAAAAGTGTCCTGAGAAATTTAGCAATAGACGCGCACTCCAGAAGCATGGAGTGAAACATATAAATTTGAAATGTTCGGTTTGTGATGTAGAATACGAATCGTTTGAGAAGTTGAACGAGCATCGAATTGAACACGTCACCGAGGGTGTATTAACCGAGGATGATTTACGCAAAGACGCCGAAGAATGGAATGCCCTCGACGACAAATCAGAAACAGATCAAAAGAACGAATTAAAATGTCCCCACTGTACATTGTTGTTCTCATACAAAAAATCCCTTTTAAAACACATCGAGACACATGCAAATAAATTCACCTGTAAAGTTTGTGGCAACGTTTTCATGAAACGGGAACACTTGTCAAAACATCTAGAAAGTCACGTGAGACCAAAATCATTCAAATGCACCGAGTGCACCAAAGTTTTCGGCAATGAACTCACTTTACGTAATCATCTAATAGCCACGAGTCACAAGACAATTCTCCAAGGGGAGGAATACGATCCAAACAAGAGATTGAAGCGGGTCGCAGCCAAAGCCGCACAGAAGATAATCGACAAAATTAAAATCGAAGACGAAAGCGACTTCGACGAGGAGGCCAAAAAGAAGGACGTCAATTATCAAGAAGAGTTAAAATCACCATCTAAAAGGACATACAGCAAAAAACTATTCGAATGCGAGACTTGCACCAAAAAATGCAGTTCCAAACAATCGCTAACAAAACACATGGAACTACACGTCAAGGATGAAAAAAGCGACAAGATCAAACTGGAGAAAAAGGACCCAGAGAAATTCCTCGACGACACCGACGACACCGACGATCGTGACGACGATTTCGAAAGCGGTCTCGACTGGCCCATGGACAATCACGAGTGTCCCACCTGCAAGAAGCGATACAGCACCAAAAAATCCCTCCTCAGGCATCAACTGCTCCACGAGGAGCCAAATTTCGAATGTGACATTTGCAACGTGAAATTCTACCGCAAAGACAAACTCAAAGCCCATTACGACAAGTGCTCCGAGAAGAATCCCGATCAAGTCCGAAAGTGCAACATTTGCGGCGACAGTTTCGAGAATAACGAAATACTCCGCGAGCATCGCGCCAAACACGTGACCGAGGGAATCCTCACCGAAGAGGACCTCCGTGAAATCGAGCCAAGGCCCGAGGAGAGAAAATCCGGCGAGAAAATCCCCCGAAAACGACGCACCGATATCGTCGGTCTCGAATGCACCGAATGCAATAAACAATACACCTCCCGCAAGGGTCTCCTCCGACACATTCAAGTCCACGAGGGCAAAAAATACCTCTGCGACATTTGTCCAAAGAAATTCTACCGTCGCGAACACCTCAAGATCCACGTCGCCAAACACAACATGATCAAACCCTACAAGTGCACTCGCTGCACGAAACGCTTCATCAAAGAGGAACAACTCACCAATCATCTGTCAAAACACGATCGTAATTTCAAAAAAAACAAAGAGACAGACAGTTCCAAGCGTTTCCTCTGCGAAATTTGCTCCAAGAGTTTCACCCAGTCGACAACTTTAATCGCCCATTTGCGCGCTCACAACGGCATCAAACCATACGTGTGCGAGGTGTGCTCCCGCCCCTTCACCACAAACGCCTATCTCAAAATGCACATGCGAACACACACCCAGGAACGTCCTTACATCTGTCAATTCTGCTCGCGAGCCTTCGCACGCGCCGACACTCTCGCCAATCATCTCACATCCCACACTGGCGAGGCCAAGTACCACTGTAAATTCTGTCCGAAAAATTTCCGCCGTCTAAAATCACTCAAGGAACACGTCTTCATTCACACCGGTCAAAGACCCTACGCGTGTCCCACTTGCGATCGACGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTATTGTTCAGAGTCCATTGATCAAGTCGCAGAATATAAAGACAATCACCATTGCCAGACAAGCGGAACCGATGACAGCTCAACATGTCATGCAGCATCAGGAAATTCTCATGCCACTTATTTTGCCATTGACAGTGACACTTGCCGATGTTGGGGAGGAAGTCATTCTGCCCGAGGGTACGAAAATATTCACCACCTCTTAG
- Protein Sequence
- MDAVEINTSESPQNEEGIVSAMEICRVCLLGNLLMRDLFHDNGVASLSAKAMSFTNVKMLPGDGLPGQVCCDCADKLEAAYDFKLQVEQADSVLREKFDTLNIKEELFFNDVEVHLEGERTRVRREINDNGEYVEATESLHDDGRDTLLKDHLALLQVEKIAEQESMLQHVHNFSDQQQQQQQQQQQHGIKDENLQDVESENIQEQNYLDQQECSQMSDDDFNNDEPFADSQESMEYSTMEKEGEMEQEQNQDQDASIEQMEHDSPESETRRIRRKVIRQSTGSEHNSDEENYFENLNLSSRLKKTQDGQSEKVFFMCYLCDKEFLSKGILKEHMHSHEEVRRTLSLKKKVPVTPQKSALPLKTPPSGKKANKCPYCGKEYLYIISFNKHIKQHEKDKDVKKSEFMAGDDDSVDYVENVNSIGVLETSIDDNDSESENEKESEVYQCEKCPEKFSNRRALQKHGVKHINLKCSVCDVEYESFEKLNEHRIEHVTEGVLTEDDLRKDAEEWNALDDKSETDQKNELKCPHCTLLFSYKKSLLKHIETHANKFTCKVCGNVFMKREHLSKHLESHVRPKSFKCTECTKVFGNELTLRNHLIATSHKTILQGEEYDPNKRLKRVAAKAAQKIIDKIKIEDESDFDEEAKKKDVNYQEELKSPSKRTYSKKLFECETCTKKCSSKQSLTKHMELHVKDEKSDKIKLEKKDPEKFLDDTDDTDDRDDDFESGLDWPMDNHECPTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLREIEPRPEERKSGEKIPRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRNFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQFCSRAFARADTLANHLTSHTGEAKYHCKFCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIVQSPLIKSQNIKTITIARQAEPMTAQHVMQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00883235;
- 90% Identity
- -
- 80% Identity
- -