Lhet045315.1
Basic Information
- Insect
- Leptopilina heterotoma
- Gene Symbol
- -
- Assembly
- GCA_015476425.1
- Location
- JABAIE010000003.1:265158-271238[-]
Transcription Factor Domain
- TF Family
- HMGA
- Domain
- HMGA domain
- PFAM
- AnimalTFDB
- TF Group
- Unclassified Structure
- Description
- This entry represents the HMGA family, whose members contain DNA-binding domains, also known as AT hooks due to their ability to interact with the narrow minor groove of AT-rich DNA sequences. They play an important role in chromatin organisation [1]. The high mobility group (HMG) proteins are the most abundant and ubiquitous nonhistone chromosomal proteins. They bind to DNA and to nucleosomes and are involved in the regulation of DNA-dependent processes such as transcription, replication, recombination, and DNA repair. They can be grouped into three families: HMGB (HMG 1/2), HMGN (HMG 14/17) and HMGA (HMG I/Y). The characteristic domains are: AT-hook for the HMGA family, the HMG Box for the HMGB family, and the nucleosome-binding domain (NBD) for the members of the HMGN family [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-08 0.00061 21.0 5.6 9 21 349 361 345 362 0.92 2 2 9.9e-08 0.0055 17.9 4.3 6 21 375 390 373 391 0.94
Sequence Information
- Coding Sequence
- ATGCACAAAGCTAGATTTGGTTCTTTAAGACCATTAAAAGATTTAGAAGACATGGGTGAAAAATTGCGACAATTTAAAATAGATTCTGATGACATTCCAAACGATATAGCGGCTTTAAATATTAAAGAAATATTGGACTCTTATTTAGTTAGAATGAAATCATTAGAAGGCCATTTCATTTACTTATTTGGAAAACCTAATTTACTTGAAATTTCTTCGCCAGTATTATATATTGATACTGGTTACAAGGCAGTTACAGTTCTTTATGCTCTTGTAGAAGCAATAGATCATGACATAGTTGCTAGGATTTTACAAAAAATCCATAACATGTTAACCACTCGTTCAATTGAACCATTTGAAAAAGTTGTCGGGCCGTACAATCACGAAATTAGAAAAGCAGTCAATATTATTTTGAGAAACAAATGGTGCGATTTAAAAAACGACGAATCTGAACCATGCCATTTTCTTGCAAAGTGTATGGCACTTCCTTTTTTAAAGGAAGAAAGCATAGTGGAGGGAATAAAACTTTTAAGGCAAGACTCGAAATCAAGAAATTCTGCAAATTTGATGGAATTCACTTCTTTTATTAAGAATAATTTTAAAGATTTTGGTGAGCTTGTGTCAGTCATTGACACTTATCCCGAAAGAACGAACAATGTCAATGAAATTTGTCTAACGAGATTAAAAAGCAAGTTGCGAAATAAAGAGAAAAAAGGTTTATGGTATATTCTTGATAAAAATCGAAAAGTTTTCGAACTCAATTTAATGGAACTAAAAACATTCCACGCTTGTCCAAAAATGGAGAAATTAAATGAGAATGAAACCATCGACAATGTCCTTCATATCGATGAACAACCCATCGCCTCAATTTCAACGGAAGTAAATAACGTTATTGAACTAATGATCACAAATGATACCATCGACAATGTTCTTCATATCGATGAACAACCTATCTCACCAACTGCCACGGAAGTAAATAACGATATTGAACCAATGATCACAAATGCTTCGGAAGCTGAGACAATTGGTCCTAATGTTCCTGCCAAACGTAGCAGGGGAAGGCCGAAGGGCAGCAAAAACAAAACAGGAACAGTCAATGAAAATAGTAAAAATATTACTGCCCCGAGTCTAAAAAGAGGAAGAGGACGGCCAGCCGGCAGTAAGAATAAAAGGCAGAAAAGATTCCAAGGTGATCCAGAATAA
- Protein Sequence
- MHKARFGSLRPLKDLEDMGEKLRQFKIDSDDIPNDIAALNIKEILDSYLVRMKSLEGHFIYLFGKPNLLEISSPVLYIDTGYKAVTVLYALVEAIDHDIVARILQKIHNMLTTRSIEPFEKVVGPYNHEIRKAVNIILRNKWCDLKNDESEPCHFLAKCMALPFLKEESIVEGIKLLRQDSKSRNSANLMEFTSFIKNNFKDFGELVSVIDTYPERTNNVNEICLTRLKSKLRNKEKKGLWYILDKNRKVFELNLMELKTFHACPKMEKLNENETIDNVLHIDEQPIASISTEVNNVIELMITNDTIDNVLHIDEQPISPTATEVNNDIEPMITNASEAETIGPNVPAKRSRGRPKGSKNKTGTVNENSKNITAPSLKRGRGRPAGSKNKRQKRFQGDPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -