Lhet042004.1
Basic Information
- Insect
- Leptopilina heterotoma
- Gene Symbol
- -
- Assembly
- GCA_015476425.1
- Location
- JABAIE010000018.1:64441-69864[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.4e-12 1e-08 36.3 0.0 1 39 357 396 357 400 0.90 2 4 8.6e-12 1.2e-08 36.1 0.1 2 39 412 449 411 452 0.94 3 4 3.1e-18 4.2e-15 56.7 0.0 2 45 467 511 466 511 0.97 4 4 3.7e-18 5.1e-15 56.5 0.0 1 42 518 560 518 561 0.97
Sequence Information
- Coding Sequence
- ATGATTAACACCTATAAGGATTTATTAACATCGGAAACTGCATTGAAGGAAGATTCAAAAATTCAACGTAGTCGAAGTGGAAAGAGAAAATTTTGTTCATTAGATAATTCATTTGAAAATAATTCATTTCTCTTCAACGAAGACTATGATCATATAACACTTCAACTTCAAGAGACAAATTCATTTTTCGGTATGACAAATATTAATAGGCCATTCACATTGGTAAAGCGTGAAAAAATAATGAAAGAAGAACTTGAGGAATTTGATAATTATCGGGAATTGACAAAATTAGATTTCAAATATGAACCACGATCAGATGTTGAGCAAGAATTTAAATATGTGGACAATGACTTTCATGAATCGCAAATCGATAATTCTCTATCATCCAGTTCTTTAGAAAGTTATCCCACACTCGTGAAAAATGATAATATTCAATTAAAAGAAGAACTCGAGGAATTTGAAAATTATCGTGAATTAACAAAATTAGATTTCAAATATGAACCCCGTGTTAACAACAAGCAAAATATTAAATATGAATCAACGAGTACAAATACATATTTTACAAATGTTGAAAATTCATTGTCATCAAATTCTTTGGAAACATTTCAGGATATGAGCCGAATGTTTACACTTTTAATAAAAGGTGACATGTTCTGTCACACAGGTTTAGGTCATTACGGACATCATCCAGATCCTGGTGAAGTGGATTTACCTCCGGAGACACAGCCAACACCACCTAGTGCAACCCTCGTCGGTACAACAATCACACATCTCAGGGATTCAGACCATCAATCAGCAGAGATCCAAAATTGCGACAGTGTGAAGATAAAATTCGAGACCTTACACACAATGGATTCGTCGGACACAATAGACATCGACAGTCATATGTCAGACAGAGCGAGTGTGAGTTCGAAAAATGCGGGCGACAACGATAATATGATGATGATAACACCCGAACTCCTTGGTCTTATGCCTTCTGGAAACTCCGTCCATTCGGATTCTGGGGAGAATAATTCTAGAGGTCATTCGGGTCAATCGGGATCTCATCATCATGGATCGAAATCATGGACGCAGGAAGATATGGATGCGGCTCTTGATGCTTTGAGGAATCATGACATGAGTCTGACAAAGGCATCCGCAACCTTTGGCATACCCTCGACCACTCTCTGGCAAAGAGCTCATCGCCTAGGAATCGACACTCCCAAGAAGGATGGACCAACAAAATCGTGGAGTGACGAGAGTCTGAATAACGCCCTCGAAGCCTTAAGAACTGGGACAATTTCTGCAAATAAGGCATCGAAAGCTTTTGGAATACCTTCTAGTACTTTGTATAAAATTGCCAGGCGAGAAGGTATCAGACTCGCGGCACCCTTCAATGCGAGCCCCACAACATGGTCACCGGCTGATCTCGACAGGGCATTGGAGGCAATCAGATCCGGTCAAACGTCAGTGCAGAGAGCGTCGACAGAATTTGGAATTCCAACCGGCACTCTTTACGGACGGTGCAAACGAGAGGGAATTGAACTCAGCAGGAGTAACCCCACTCCGTGGAGCGAGGACGCGATGACCGAGGCTCTTGAGGCTGTTAGGCTGGGACACATGAGTATAAACCAAGCCGCAATTCACTACAATTTACCGTATTCGTCGTTATACGGACGTTTCAAAAGAGGTAAATACGAAGATCCAGTAGTCAACGAAATGTCACAAGACGGTAGCAGTCCACATTATCATCATCATCAAAGTCCAAGTCAAAATCATTCTTCTTCTCTTCCGGATCAAATGCCCTACCAGGGTAGCTGA
- Protein Sequence
- MINTYKDLLTSETALKEDSKIQRSRSGKRKFCSLDNSFENNSFLFNEDYDHITLQLQETNSFFGMTNINRPFTLVKREKIMKEELEEFDNYRELTKLDFKYEPRSDVEQEFKYVDNDFHESQIDNSLSSSSLESYPTLVKNDNIQLKEELEEFENYRELTKLDFKYEPRVNNKQNIKYESTSTNTYFTNVENSLSSNSLETFQDMSRMFTLLIKGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDSDHQSAEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAGDNDNMMMITPELLGLMPSGNSVHSDSGENNSRGHSGQSGSHHHGSKSWTQEDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEDPVVNEMSQDGSSPHYHHHQSPSQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00089437;
- 90% Identity
- -
- 80% Identity
- -