Ldro005325.1
Basic Information
- Insect
- Leptopilina drosophilae
- Gene Symbol
- -
- Assembly
- GCA_032873175.1
- Location
- CM065478.1:76800275-76804447[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.016 3.3 9.7 0.9 1 21 76 97 76 98 0.94 2 18 0.27 56 5.8 1.8 1 23 106 129 106 129 0.92 3 18 0.0048 0.98 11.3 1.6 1 21 210 231 210 232 0.96 4 18 0.0013 0.26 13.1 0.1 3 22 291 311 289 311 0.94 5 18 0.87 1.8e+02 4.2 0.5 2 23 320 342 319 342 0.93 6 18 0.003 0.62 11.9 0.2 3 21 394 412 393 413 0.94 7 18 0.8 1.6e+02 4.3 3.0 1 22 421 442 421 444 0.81 8 18 0.023 4.6 9.2 0.4 3 21 509 528 508 529 0.94 9 18 0.00011 0.023 16.5 2.9 1 23 546 569 546 569 0.98 10 18 0.0013 0.27 13.1 0.5 1 21 629 650 629 651 0.96 11 18 0.97 2e+02 4.1 0.9 1 23 659 682 659 682 0.83 12 18 0.015 3.1 9.7 1.5 1 21 740 761 740 762 0.93 13 18 0.0058 1.2 11.1 6.7 1 23 770 793 770 793 0.97 14 18 0.0033 0.67 11.8 0.3 2 21 912 932 911 933 0.92 15 18 0.0013 0.27 13.1 0.5 2 23 942 963 941 964 0.95 16 18 0.00021 0.043 15.6 0.4 1 20 1059 1079 1059 1080 0.96 17 18 0.0017 0.34 12.7 0.1 1 21 1310 1331 1310 1332 0.96 18 18 0.0024 0.49 12.3 0.6 1 23 1339 1362 1339 1362 0.97
Sequence Information
- Coding Sequence
- ATGTTTGTGGGTGAAGGAGCGCAGGCCGAAATTGTTTGGGAGAGTATCAATATATCGGATGAGAATATGGAAGggattgttaataattgtaatgaatttaagCAAAAAGAGGGATCGGAGAAGAGAATCAGAAAATTTGAATCCTCTGCAAGGCCAACACAGGTGAAATACTTAACACGATCACGTTATCGAATGCCAGAAAGATCAGCGAAGAATAAATCAATCTTCGACTGTCCGAACAATTGTGGAAGTTCCTTCTATCAGAAATTCACACTAGATAGACACTTGAAATTCACTTGTGGTCAACCATTACGATACCGATGTCCGTACTGCAATATGTCGTCGAGAATTCGAAATTgcattaatattcatttaaaagcACGTCATCCGAATTTGAGAAACTATGTGATTGATATGTCAACCAGTAAACCGGAATCACAATTCGAGGAGGATTATAATTCGCCTCATATTGTGCAGAAAGTCGAGCCCATTTGGAATGAGGAGCaggaaatcaaaattttaaatgtttctagTCTGGCCGCATTGGATATTAAACACGAGTATGATAACATGGAAGATGAAGATGATAATTTCTTCAATAAGCATTTAGTGAGAGCGCAAAAGCGCTATGTTTGTCCGAACAATTGTGGTAATTCGTACAAGCACGAGCATACTTTGAAGGTTCATTTGAAATTCGGGTGCAATAGACACGAtcaacataattttcatttagatGATGATGAATCAGACTCGGAATACGATGTCTCGGCGAATGATATTTTAAAGGTGAAGAGTACCAACGAATTGCTGAATCCAATGGCGATTACCGAACTGAAGAATTTTGAGCAAAATTCCGACGGTAAGTGGATTTGTCCAAACCAGTGTGGAGGAACTTTCAGCAGTCGAGGTAACTTGAACTATCATCTGAAAACCAACTGTGGTCTAAAAGCTAAGTTAGAGTGTCCCTATTGTCTACATCGATCAAAACAACCATCAAATGGTTTCATTCACGTGAGAAATGCTCATCCCGGTGCTGAAATTTGCCTTGTTCACGTCGACACTGGCGAAGTCTTCAAGAGCAAGAAGGAAGCTGATCAAAATCCACATTTCGATCTCATTAATGGTTCGCCTCAAGTTTACGTAGATAGGAAAAAACCGTCGGGCAAAGCTGCAAATAATTGCCAAAACTGTGGCAAAGATTTCAAATCAGAACGCACTCTGGGTAGACACATTCTCGAAGGCTGCGGCTATCCACCTCGCTTCAAATGTCCTTACTGCGACTATCAAGTCAGAAGATTGTCCTACGCCTTCTTCCACGTGTCCAAGCATCATCCAGGTTGCGAAGTGTATATGGTCGACTTAGTCACCGGTGACAGTATTACCGATCCCGCTCAAATCAAGAAAGAAGCCATCGCCGACATTGTCGACGAACCGAAACCCACGCCCATCGATCCAGTTTTAGTTCTACAACCCAGGCGAATCGTCAAATCCCATCCCGCGGGACTCCAAAAGAAAAGACTCCTCTGTCCAATGGGCTGCGgtcgcttcttcttcttcagagCAAGTCTCGAAAAACACAAGAAATACTACTGCTCCAGAAACAGAAAGTCCAAAATTCCATCATCGTCAAGTCGCTACAAGTGTCCCTACTGCGACAATCGCTACGAACACATCTCAAGTCTCTTCAGACACATCAAATCCACTCATCCCGCAAAGAAAAAATCCTTCATCGACACCCACGAGGAGGAAATCGTACCCGAGAGTGCCAATTCTCCCCTACCCCCCAAGAAGGAGGCGCCAAAAGCAAAGAAACTGCCGAAACAGTCCGAAGACTTGAATGAGAAGACTGATGATAACCTAGAAACTAAGGAACCCCCCAAAGTATTCGTATGCCCCAACAAATGCGGCAGTAGTTTTGCAAATCTATGCAACGTTCAGCGGCACATTCGTCTCAATTGTTCCAAAGCTCGTCGCTACAAATGTCCCCAGTGCAATTATCGATCTCAAAAATACCTCCAAATAGCGAAACACGTAAAGGCTAATCATAAGATGACTAAAATTTACGCCGTCGATTTCTTCACCAAAAAGCAAATTTACGGGGAAATGAGACACAGACCAACTAGGCGCATCGTGAATCCCAAGACTGAAGAGGCTCCGCCAATCGACGTCAAACCCGACCCAGAACCAAAAGTCGAAAAGAAAACCGGTAAAAACCGCCATCCTTGTACCAACAACTGTGGTCGATTCTTCAGCACAAAACGTGCTGTCACAATGCACGTACGTCACATCTGCGGAAAAGCCCCTCGATTCAAGTGTCCCTACTGCACCCAAATTTGTCGCCACCAAGGCAACATGACAATTCACATAAAACACCGTCATCCCGGCAAGAAGAACTACATGATCGACATCGCTAAGAAAAAGAAATCACCAAAGGCGACAAATGTCGAGAAACCGCccgaaattaaaaacaagagaGAAGAAAGacaagaaaaacaaaaagaagaaaaacaagaaaaacaagaaaaacaagaaaaacaagaaaacCAAGGAAAACAAGAAAGACAAGAAAGACATGAAAGAAGAGAGATTAAAGAAGAAAGAGTAGTCAAAGTAGAAGCTACAATtaaggaagaaaaagaaaacgtCGAGGACAAGACGAAAAATACGTCCATCTTTGGGAATTCAACGAAACGAAAGATTCCCAGACTGTTTAATTACAAAAGGCGAAGAATGGTGTGTCCCAACAATTGCGGACGTTTCTTCACATCGCGCGTGAAATTGCAACTGCACACGAGCACCGTTTGCAAGAACCCAGTGAACACTAAATGTCCCTACTGCCCAAAAGTGGGCAAAAACGCATGGAGCATTGATAGACACATTAGACAGCATCATTCCGATAGGAAGCAAATTCTCCAAGAAGAAACGGAATCAAAATTCCAAAAGAAGAACGAAACACTAGATGACGAGCAGGAAGAGGAGGTGGAACTGAGACTAACCGACAATATCGAGGATGATTCGGAGAATCTTGCGAAACTAGAGGAGGAGGATGATGAGACAGACGATGTCGAGATGAAAATGGTCCACGAGCCGGAAAATAAGGAAGAAAAGGTCGACACACCCGACACACCATCAAGTACAAATTCAAGTGCAAATTTCGATAGTCCATCAAAGAAGTTCGTCTGTCCGAACAAATGCGGAAAATCCTACCCCAAGGAGTCGAGTCTCAAGAATCATCTGTTCTTCACTTGTCAAAAGCCCGCACGCTATGCCTGTCCGTACTGTCGAAGCTGTTCCAAAGTCACCTCCAATGGTTACGTGCACGTGAAACGAATGCATCCCGATCGCAAGGTGTACCTCATCGACATCACGACTAATAAAGTCATCCGTTCTAGAAGAATGCCACAGGGTCGAACTATCAGCTACGAAATTGATAGGGAAGACAAGGAGTACGATAGGGAATACGATGGGGAAGAAAATAGGGAGTTCGACAAGGAGGACGATAGGGAATTCGACAAGGAAGACGATAGAGACTACGATAAGGAAGACGATAGGGAAGGTGCTAGAGAGTACGATAAGGAAGACGATAAAGAAGATATAGAAGATAGAGAAGATATAGACGATAGAGAAGATATAGAAGATAGAGAAGATATAGACGATAGAGAAGATATAGAAGACGATAGAGAGTACGATAAGGAAGACCCTAGGGACTACGATAAGGAAGACAATACCGATTACGAAAAAGACGACGATAAAGAAGACGTCGATATGGAGGAAGAAATGGCACTGTCGACAAACGTCGATATCGACGTTGATGAACCCGACGAGCCAGATGAGCCGATTTTGGGCGCCGATGAGGAATTCCCAAACGATCCGATAAGTTCCGAACGAGAATCATCGGAAAATAAGAAGAAGCAGAAGGAGGAGATTTTCGTCTGTCCAAATAATTGCGGCAGTTCTTTTACTAATgagaataaattgaataatcaTGTTCGCGATCAGTGTGGACCACCACGCTACAAGTGTCCCTATTGTTTTTACATTACAAGAGAGCCGTCTAATGTTTACGCTCACATTAAGAATAAACATCCCGATGAGAGGATCTACATGATTGACACTGACATGAATCAAAGCTGTAATGAGCCAGACTCACCTACAGGCAATGAAGACAATTAA
- Protein Sequence
- MFVGEGAQAEIVWESINISDENMEGIVNNCNEFKQKEGSEKRIRKFESSARPTQVKYLTRSRYRMPERSAKNKSIFDCPNNCGSSFYQKFTLDRHLKFTCGQPLRYRCPYCNMSSRIRNCINIHLKARHPNLRNYVIDMSTSKPESQFEEDYNSPHIVQKVEPIWNEEQEIKILNVSSLAALDIKHEYDNMEDEDDNFFNKHLVRAQKRYVCPNNCGNSYKHEHTLKVHLKFGCNRHDQHNFHLDDDESDSEYDVSANDILKVKSTNELLNPMAITELKNFEQNSDGKWICPNQCGGTFSSRGNLNYHLKTNCGLKAKLECPYCLHRSKQPSNGFIHVRNAHPGAEICLVHVDTGEVFKSKKEADQNPHFDLINGSPQVYVDRKKPSGKAANNCQNCGKDFKSERTLGRHILEGCGYPPRFKCPYCDYQVRRLSYAFFHVSKHHPGCEVYMVDLVTGDSITDPAQIKKEAIADIVDEPKPTPIDPVLVLQPRRIVKSHPAGLQKKRLLCPMGCGRFFFFRASLEKHKKYYCSRNRKSKIPSSSSRYKCPYCDNRYEHISSLFRHIKSTHPAKKKSFIDTHEEEIVPESANSPLPPKKEAPKAKKLPKQSEDLNEKTDDNLETKEPPKVFVCPNKCGSSFANLCNVQRHIRLNCSKARRYKCPQCNYRSQKYLQIAKHVKANHKMTKIYAVDFFTKKQIYGEMRHRPTRRIVNPKTEEAPPIDVKPDPEPKVEKKTGKNRHPCTNNCGRFFSTKRAVTMHVRHICGKAPRFKCPYCTQICRHQGNMTIHIKHRHPGKKNYMIDIAKKKKSPKATNVEKPPEIKNKREERQEKQKEEKQEKQEKQEKQENQGKQERQERHERREIKEERVVKVEATIKEEKENVEDKTKNTSIFGNSTKRKIPRLFNYKRRRMVCPNNCGRFFTSRVKLQLHTSTVCKNPVNTKCPYCPKVGKNAWSIDRHIRQHHSDRKQILQEETESKFQKKNETLDDEQEEEVELRLTDNIEDDSENLAKLEEEDDETDDVEMKMVHEPENKEEKVDTPDTPSSTNSSANFDSPSKKFVCPNKCGKSYPKESSLKNHLFFTCQKPARYACPYCRSCSKVTSNGYVHVKRMHPDRKVYLIDITTNKVIRSRRMPQGRTISYEIDREDKEYDREYDGEENREFDKEDDREFDKEDDRDYDKEDDREGAREYDKEDDKEDIEDREDIDDREDIEDREDIDDREDIEDDREYDKEDPRDYDKEDNTDYEKDDDKEDVDMEEEMALSTNVDIDVDEPDEPDEPILGADEEFPNDPISSERESSENKKKQKEEIFVCPNNCGSSFTNENKLNNHVRDQCGPPRYKCPYCFYITREPSNVYAHIKNKHPDERIYMIDTDMNQSCNEPDSPTGNEDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00883281; iTF_00882435;
- 90% Identity
- -
- 80% Identity
- -