Basic Information

Insect: Leptopilina drosophilae
Gene Symbol: -
Assembly: GCA_032873175.1
Location: CM065483.1:1862328-1865466[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.097 20 7.2 0.0 1 23 332 354 332 354 0.88

2 12 0.026 5.3 9.0 0.5 2 22 357 377 356 377 0.92

3 12 2.8e-06 0.00056 21.5 1.9 3 23 423 443 422 443 0.98

4 12 5e-05 0.01 17.6 0.4 1 23 449 471 449 471 0.98

5 12 0.0004 0.08 14.7 2.4 1 23 477 499 477 499 0.98

6 12 1.8e-05 0.0036 19.0 1.0 1 23 505 527 505 527 0.98

7 12 0.00049 0.1 14.4 1.3 1 23 533 555 533 555 0.98

8 12 5.1e-07 0.0001 23.8 0.5 1 23 563 585 563 585 0.98

9 12 0.0047 0.95 11.3 0.2 1 23 591 613 591 613 0.94

10 12 1.1e-05 0.0022 19.7 1.8 1 23 619 641 619 641 0.98

11 12 1.1e-05 0.0023 19.6 0.5 1 23 647 669 647 669 0.98

12 12 0.003 0.6 12.0 2.5 1 23 675 698 675 698 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.097	20	7.2	0.0	1	23	332	354	332	354	0.88
2	12	0.026	5.3	9.0	0.5	2	22	357	377	356	377	0.92
3	12	2.8e-06	0.00056	21.5	1.9	3	23	423	443	422	443	0.98
4	12	5e-05	0.01	17.6	0.4	1	23	449	471	449	471	0.98
5	12	0.0004	0.08	14.7	2.4	1	23	477	499	477	499	0.98
6	12	1.8e-05	0.0036	19.0	1.0	1	23	505	527	505	527	0.98
7	12	0.00049	0.1	14.4	1.3	1	23	533	555	533	555	0.98
8	12	5.1e-07	0.0001	23.8	0.5	1	23	563	585	563	585	0.98
9	12	0.0047	0.95	11.3	0.2	1	23	591	613	591	613	0.94
10	12	1.1e-05	0.0022	19.7	1.8	1	23	619	641	619	641	0.98
11	12	1.1e-05	0.0023	19.6	0.5	1	23	647	669	647	669	0.98
12	12	0.003	0.6	12.0	2.5	1	23	675	698	675	698	0.94

Sequence Information

Coding Sequence: atGTCCACCGTCATTGAAGAGTTCAACTACCTGTGTCGTCTGTGTGCGACGAAACTCCTCATGGGTTTGCCGATTTTCGATAACGATAAGCATATGAGAAATAtcgacaaaaaaattacaacctGCTTATCCCTACagGTATCGATGAGTGATCAACTGCCAAAAGTAATCTGCGGCGAATGTGCATTTAAATTGGAAGAGTTGTTTGATTTTCGTGAAAAGTGTCTCAACACTGAGGAAATGTTCACGGGAATGTTGAAAGAAATCACAAAACAGGAAGACGCAAATATGGAGCatcatttaaatattgaaattgaatcgAACATTGAAGAAATACAGGGTCATGGAACAACAAATCAGCTGACTGATGAAATTCACACAATGCAAATAATGGATGATATGGATTTGGCTGGTGGTGAACAGGTTGTCACGCAGGAAGAAATTCATCATCAAGACGATGATCTCGAAGTCACTGATATTGATTGTTTGGATGGTGAAACAGTTCGAATGGTCGATGAGCATATTCGAGaagTTTCAAATCATGAGATTGCGATGCATTTGGAAGGAGATATAACAGTTGTTGGGAATTTGACTGTACAGGGACATTTAGAtccaattgaaattaattatgtcACGATGGATCTCAACGCCAGTAACGAACAAATTGTTCACTATTGCGAAAGCGTTAAATATGAGCCACTTGCCGTAAAAGATGAATTTCGTAGGCTACATGAGAGCCTTAATGTCGAGCCAACGACTCATGCTATTGAAAATAACGTGAGCACAGAAGACTTTTCCTCAACGCACAAAACAAAGGAAACATTTAGCATTCCAAGTGAATCGTTAAATACAACGACAGTAACGGAACTCCCCTCAACAAGTCAAGTGAACACTGAAAATTGTCTAGTTGTTGAGTATTCAAAGCAGGGTAAAAAGGAATTATTCGATTCGATTCTTGAGAATCCTACCATAGACGCAAACGGAGTGAATTGGTATGTTTGTCCATTTTGCAATGAAGCTGCCTCGGatccaaataatttaattccccaTTTTGAGCAGCATTTTTGTACATGTCCCACTTGTGGTCTTTATTTCACGAGCGTTGAAGTATTGACGATTCATAAGCAAACATGTGaggagaaaattaattcaatagaCGAACAAGTTATTGTAGCGAATAAAATTGATGAGGTGGAAAAAATTGAGGAAACACAGGACGAACAAGAGAAGAAGCAATCAGTTCGTAGGAAGTGGACGCCGAAAATTTGTACCCAATGTGGAAAGCAGTACAGAACAAACTACAAATTACAAGAGCATATGCGTAAGCACACGGGTGAAAAACCATTTCAGTGTTCAATGTGCGAGAAAGCTTTTAGAAGTAAAATTGGATTAGCGCAACATTTTGCGACACACACCGGACAGTTTGATTATAATTGTTCGACATGTGGGAAGGGTTTTCAGTGCAAGAGCTATCTTATCGTGCATCAAAGGGTACACTCGGACCTAAAGCCATATCCCTGCGATATTTgcagtcaaaatttcaaaacaaaacaatcaCTTCTCGATCATCAAAATCGTCATCTAGGCGTGAAACCCTACATGTGCGAAGTTTGCGGACGAGGTTTCATCACCAAGGGTCTATGCAAGAGTCATCAGAAAATACACTCCGGTACGGATAATCGCCAATATCCCTGTGTTGTTTGCAATAAAATGTTCGTCAGCAAAAGCTATTTGAACACTCATCTTCGAATTCACACCGGCGAGAAACCCTATTTGTGTGAGGTTTGCGGAAAGGGTTTCTTGACGCGTGTCGATTTGAAAATTCACTCCACCATGCATACCGGTGAGAAGAGTTTTAAATGTGACGTTTGTGGAAAAGTATTCGCGAGACGTGCCGCCTTAAGATGCCATCGAAGATCACACACTGGTGAACGACCATACAGATGTGATGTTTGCGGTAAAACTTTTACACAATATAGTCCAATGGCAATTCATAAACGTTTACATACCGGTGAAAGACCCTATGAATGTGATGTTTGTGGTAAGGGTTTTGTGTCAAGATCAACGATGATGTGTCACAAGAAAAAGAATCACGCCGACGCTCATGCAAAAGATGGTTCGAGCGATAAAAAAAGGAAGGCCGGTACTGGTTCTGAATCAAAAGCAAATGTAGTGCACATATTGGctgaataa
Protein Sequence: MSTVIEEFNYLCRLCATKLLMGLPIFDNDKHMRNIDKKITTCLSLQVSMSDQLPKVICGECAFKLEELFDFREKCLNTEEMFTGMLKEITKQEDANMEHHLNIEIESNIEEIQGHGTTNQLTDEIHTMQIMDDMDLAGGEQVVTQEEIHHQDDDLEVTDIDCLDGETVRMVDEHIREVSNHEIAMHLEGDITVVGNLTVQGHLDPIEINYVTMDLNASNEQIVHYCESVKYEPLAVKDEFRRLHESLNVEPTTHAIENNVSTEDFSSTHKTKETFSIPSESLNTTTVTELPSTSQVNTENCLVVEYSKQGKKELFDSILENPTIDANGVNWYVCPFCNEAASDPNNLIPHFEQHFCTCPTCGLYFTSVEVLTIHKQTCEEKINSIDEQVIVANKIDEVEKIEETQDEQEKKQSVRRKWTPKICTQCGKQYRTNYKLQEHMRKHTGEKPFQCSMCEKAFRSKIGLAQHFATHTGQFDYNCSTCGKGFQCKSYLIVHQRVHSDLKPYPCDICSQNFKTKQSLLDHQNRHLGVKPYMCEVCGRGFITKGLCKSHQKIHSGTDNRQYPCVVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCDVCGKVFARRAALRCHRRSHTGERPYRCDVCGKTFTQYSPMAIHKRLHTGERPYECDVCGKGFVSRSTMMCHKKKNHADAHAKDGSSDKKRKAGTGSESKANVVHILAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00883246;
90% Identity: iTF_00883246; iTF_00883300; iTF_00882395;
80% Identity: -