Ldro013084.1
Basic Information
- Insect
- Leptopilina drosophilae
- Gene Symbol
- -
- Assembly
- GCA_032873175.1
- Location
- CM065480.1:34092928-34097598[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.23 47 6.0 1.8 1 23 426 448 426 448 0.97 2 19 0.017 3.5 9.6 0.5 2 23 483 504 482 504 0.96 3 19 3.1e-05 0.0062 18.2 0.9 1 23 555 577 555 577 0.95 4 19 0.089 18 7.3 0.1 2 23 581 602 580 602 0.95 5 19 1.4e-05 0.0028 19.3 2.1 2 23 636 657 635 657 0.97 6 19 0.025 5.1 9.1 2.1 2 23 662 683 661 683 0.96 7 19 0.00095 0.19 13.5 0.4 1 21 689 709 689 713 0.92 8 19 2.8e-05 0.0057 18.3 3.8 1 23 779 801 779 801 0.98 9 19 4.1e-05 0.0083 17.8 3.8 1 23 847 869 847 869 0.97 10 19 0.00029 0.058 15.2 0.7 1 20 874 893 874 895 0.94 11 19 0.054 11 8.0 0.3 2 23 906 927 906 927 0.97 12 19 2.9e-05 0.0059 18.3 0.6 2 23 966 987 965 987 0.97 13 19 2.6e-05 0.0054 18.4 1.6 1 23 992 1014 992 1014 0.95 14 19 0.00015 0.03 16.1 2.9 1 23 1020 1042 1020 1042 0.98 15 19 4.7e-06 0.00095 20.8 0.4 1 23 1058 1080 1058 1080 0.95 16 19 3.8e-07 7.7e-05 24.2 0.6 1 23 1086 1108 1086 1108 0.99 17 19 0.00019 0.038 15.7 0.2 1 23 1114 1136 1114 1136 0.97 18 19 0.00078 0.16 13.8 4.2 1 23 1142 1164 1142 1164 0.96 19 19 0.011 2.2 10.2 0.4 1 20 1170 1189 1170 1191 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTTGAAATAAATACGTCGGAGTCACCGCAAAATGAAGAGGGAATTGTATCAGCAATGGAAATATGTAGAGTTTGTctccttgaaaatttattaatgcgaGACCTATTTCATGATAATGGGGTCGCATCATTGTCCGCTAAGGCTATGAGCTTTACCAACGTAAAGATGTTACCTGGCGATGGACTACCAGGACAAGTTTGTTGTGATTGTGCTGATAAATTAGAAGCTGCCTATGATTTTAAATTACAAGTAGAACAAGCTGACAATGTGTTACGAGAAAAATTTGAcactttaaatataaaagaagagttattttttaatgacgTGGAAGTTCATTTAGATGGAGAAAGAACAAGAGTAAGACGTGAAATTAATGATAATGGTGAATACGTGGAGGCGACAGAATCTTTGCACGACGATGGGAGAGACACTCTTTTAAAAGATCATCTTGCACTTCTACAAGTGGAAAAAATTGCCGAACAAGAAAGCATGTTACAGCAcgGTGTAGAGCACTTGCAAGAGCAACTTCAGGAAGAATTACACGAGGGTGAATTAGAAGAAGATGATTTGCAGGAGGAAGAACAGCTGCAGGAACAGCATTTGCAAGAGGAACATTTACAGGAACAGCATCTACAGGAACATCATCTGCAAGAACATCATCTACAAGAGCATCATTTACAGGAGCATCATCTACAGGAACAACAGATGCAAGAAGAACATCTTCAGGAAGAACATTTACAAGATCAATTACAAGACGACGATGATCTAGCCAATGATCTCGATAAACAACCAAATAATCAATTACTCCATTTACAACAACTTTCCCAATCAGTGCACAATTTTTCCaatcaacaacaacaacaacaacaacaacaacaacaacatggCATCAAGGATGAAAATCTCCAGGACGTTGAGTCTGAAAATATTCAAGAACAAAATTATCTCGTTCAACAGGAATGCTCGCAAATGAGTGATGATGATTTTAATAATGACGAACCTTTCGTTGATTCTCAAGAAACCATGGAATATTCAACAATGGAGAAGGAAGGAGAAATGGAACAAGAACAGAATCAGGATCAAGATGCTTCCATTGAACAAATGGAACACGAATCACCACAAAATGAAACACGTCGTAGTAGACGTAAAGTGATACGTCAATCGACCGGATCGGAACATAATTCCGATGAGGAGAATTactttgaaaatcttaatttaagttCACGTTTAAAGAAAACACAGGATGGTCAATCGGAGAAGGTCTTTTTCATGTGTTATCtttgtgataaagaatttttatcgaaGGGAATTTTAAAAGAACATATGCACTCACACGAAGAGGTGAGACGAACTCTGTCCTTGAAGAAAAAAGTTCCGATCACGCCACAAAAATCAGCATTACCTTTAAAAACTCCTCCATCCGGTAAAAAGGCGAATAAATGTCCGTATTGTGGTAAAGAATATCTCTACATAATTTCCTTCAACAAACACATAAAGCAACACGAGAAAGATAAAGACGTCAAGAACAGTGAATTTATGACAGGCGATGATGATTCTGTCGATTACGTTGAGAATGTAAATTCCATCGGTGCTTTAGATACAAGCATCGACGATAATAATTCCGAATCCGAAAATGAGAACGATTCAGAAATTTACCAATGTGAAAAGTGTCCTGAGAAATTTAGCAATAGACGCGCACTACAAAAACATGGAGTTAAACACATAAATTTGAAATGTTCGGTTTGTGATGTAGAATACGAATCATTGGAGAAGTTGAGCGAGCATCGAATTGAACACGTCACCGAAGGTGTATTAACCGAGGAGGATTTACGTAAAGACGCCGAAGAATGGAATGCTCTTGACGACAAAGTTGAAACAGATCAAAAGAACGAATTAAAATGTCCACACTGTACATTGGTATTCTCATACAAAAAATCTCTTCTAAAACACATCGAGACACATGCAAATAAATTATCCTGTAAAATTTGTGGCAGCGTTTTCTTGAAACGAAGACACTTGTCAAAACATCTAGAAAGTCACGCGAGACCAAAATCATTCAAATGCACCGAGTGCAGCAAAGTTTTCGGCAACGAACTAACATTACGTAATCATCTAATAGCCACGAGTCACAAGACAATTCTTCAAGGAGAGGAATACGATCCAAATAAGAGATTGAAGCGGGTCGCAGCCAAAGCCGCACAGAAGATAATCgacaaaattaaaatcgaagACGAGAGCGATTACGACGAGGACGCCAAAAAGAAGGACGGTAATTATCACGAAGAGGCAAAATCACCATCTAAAAGAACgtacaataaaaaattctttgaatgcGAGACTTGTAACAAAAAATGCAGTTCCAAACAGTCTCTAACAAAACACATGGAAATTCACGTCAAGGATGAAAAAAGCGACAAGGACAAGATCAAGCAGGAAAAAAAGGACGCAGAGAAATTCCTCGACGACACCGACGACACTGACGATCGTGACGATGATTTCGAAAGCGGTCTTGACTGGCCCATGGACAATCACGAGTGTCCCACCTGCAAGAAGCGATACAGCACCAAAAAATCCCTCCTTAGGCATCAACTCCTTCACGAGGAGCCCAATTTCGAATGTGACATTTGCAACGTGAAATTCTACCGTAAAGACAAACTCAAAGCCCATTACGACAAGTGCTCCGAGAAGAATCCCGATCAAGTGCGTAAGTGCAACATTTGCGGCGACACTTTCGAGAATAACGAAATACTCCGCGAGCATCGCGCCAAACACGTGACCGAGGGAATCCTAACCGAAGAGGACCTCCGTGAAATTGAACCAAGGCCCGAGGAGAGAAAGTCTGGCGAGAAAATCCCCCGAAAACGACGAACTGATATCGTCGGTTTGGAATGCACCGAATGCAATAAACAATACACCTCCCGCAAGGGTCTCCTCCGACACATTCAAGTCCATGAGGGCAAGAAATACCTCTGCGACATTTGTCCAAAGAAATTCTACCGACGCGAGCACCTGAAGATCCACGTCGCCAAACACAACATGATCAAACCCTACAAATGCACTCGTTGCACGAAACGTTTCATCAAGGAGGAACAACTAACGAATCATCTCTCAAAACACGATCGTAATTTCAAGAAGAACAAAGAGACGGACAGTTCCAAACGTTTCCTTTGCGAAATTTGCTCCAAGAGTTTCACCCAGTCGACAACTTTAATTGCCCATTTGCGCGCTCACAACGGAATCAAACCGTACGTGTGCGAAGTGTGCTCACGACCCTTCACGACAAACGCCTATCTCAAAATGCACATGCGAACACACACCCAGGAACGCCCTTACATCTGTCAATTCTGCTCACGAGCCTTCGCACGCGCCGACACTCTCGCCAATCATCTCACCTCCCACACTGGCGAGGCCAAGTACCATTGTAAATTCTGTCCAAAAAATTTCCGTCGACTAAAATCACTCAAAGAACACGTCTTCATTCACACCGGTCAAAGACCCTACGCGTGTCCCACCTGCGATCGACGTTTCAACAACAATGGCAGTCGCTACGCTCACAGTAAACGTTGCAAGCAAAATATGCTCCAAAATCAAAATCGTGCGCAACTTGTGACGCAAGTGCCACAGCAGCAGCAGACTCTACAGATACAGCAACATCAACAACAGCAACAGCAGcagcatcatcatcatcatcaacagCAACATCAAAAATTACACCAGACTATTGTTCAGAGTCCATTGATTAAATCGCAGAATATAAAGACAATCACCATTGCTAGACAAGCGGAACCAATGACTGCTCAACATGTTATGCAGCATCAAGAAATTCTCATGCCACTTATTTTGCCATTGACAGTGACACTTGCCGATGTTGGGGAAGAAGTCATCCTGCCGGAGGGTACGAAAATATTCACCACCTCTTAG
- Protein Sequence
- MDAVEINTSESPQNEEGIVSAMEICRVCLLENLLMRDLFHDNGVASLSAKAMSFTNVKMLPGDGLPGQVCCDCADKLEAAYDFKLQVEQADNVLREKFDTLNIKEELFFNDVEVHLDGERTRVRREINDNGEYVEATESLHDDGRDTLLKDHLALLQVEKIAEQESMLQHGVEHLQEQLQEELHEGELEEDDLQEEEQLQEQHLQEEHLQEQHLQEHHLQEHHLQEHHLQEHHLQEQQMQEEHLQEEHLQDQLQDDDDLANDLDKQPNNQLLHLQQLSQSVHNFSNQQQQQQQQQQQHGIKDENLQDVESENIQEQNYLVQQECSQMSDDDFNNDEPFVDSQETMEYSTMEKEGEMEQEQNQDQDASIEQMEHESPQNETRRSRRKVIRQSTGSEHNSDEENYFENLNLSSRLKKTQDGQSEKVFFMCYLCDKEFLSKGILKEHMHSHEEVRRTLSLKKKVPITPQKSALPLKTPPSGKKANKCPYCGKEYLYIISFNKHIKQHEKDKDVKNSEFMTGDDDSVDYVENVNSIGALDTSIDDNNSESENENDSEIYQCEKCPEKFSNRRALQKHGVKHINLKCSVCDVEYESLEKLSEHRIEHVTEGVLTEEDLRKDAEEWNALDDKVETDQKNELKCPHCTLVFSYKKSLLKHIETHANKLSCKICGSVFLKRRHLSKHLESHARPKSFKCTECSKVFGNELTLRNHLIATSHKTILQGEEYDPNKRLKRVAAKAAQKIIDKIKIEDESDYDEDAKKKDGNYHEEAKSPSKRTYNKKFFECETCNKKCSSKQSLTKHMEIHVKDEKSDKDKIKQEKKDAEKFLDDTDDTDDRDDDFESGLDWPMDNHECPTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRAKHVTEGILTEEDLREIEPRPEERKSGEKIPRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRNFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQFCSRAFARADTLANHLTSHTGEAKYHCKFCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNMLQNQNRAQLVTQVPQQQQTLQIQQHQQQQQQQHHHHHQQQHQKLHQTIVQSPLIKSQNIKTITIARQAEPMTAQHVMQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00883235;
- 90% Identity
- iTF_00883235;
- 80% Identity
- -